Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0073
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0831 + 11620831-11620883,11621002-11621106,11621399-11621873     28   4.8  
02_03_0121 + 15468894-15468906,15469008-15469193,15474157-154746...    28   4.8  

>03_02_0831 + 11620831-11620883,11621002-11621106,11621399-11621873
          Length = 210

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 468 TSPSKSSASRNLPSDRNRVPLRRSGELLS 382
           +SPS S+A R+ PS+    PL R  E  S
Sbjct: 132 SSPSSSAARRSTPSENKNQPLPRHSEAYS 160


>02_03_0121 +
           15468894-15468906,15469008-15469193,15474157-15474650,
           15475090-15475521,15475597-15475821,15476065-15476346,
           15476432-15476704,15477680-15477805,15481010-15481288,
           15481313-15481588,15481670-15482113,15482200-15482397,
           15482574-15482732,15482832-15483085,15483164-15483316,
           15483395-15483683,15483769-15483807,15483913-15483951
          Length = 1386

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 304 TRPRACCYVKPPPTIIRKLPSS*TQPTE*LAGSSQ 408
           T P A     PPP+I     SS T PTE  A S++
Sbjct: 89  TEPAAAATEPPPPSIRTAAASSPTTPTEPTAASTE 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,207,135
Number of Sequences: 37544
Number of extensions: 309847
Number of successful extensions: 660
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)