Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0073
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35767| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.076
SB_34555| Best HMM Match : EGF (HMM E-Value=7.00649e-45)               31   0.93 
SB_55995| Best HMM Match : F5_F8_type_C (HMM E-Value=4.9e-15)          29   2.1  
SB_9881| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_57323| Best HMM Match : ShTK (HMM E-Value=0)                        28   6.6  
SB_34553| Best HMM Match : F5_F8_type_C (HMM E-Value=8.3e-22)          27   8.7  

>SB_35767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +1

Query: 208 FLNFVIVTYFGEQN*SRFSYMFTKSFACC 294
           F NFVI   F E+  S F Y F+K F CC
Sbjct: 76  FANFVIFCVFTEKMRSHFKYWFSKIFPCC 104


>SB_34555| Best HMM Match : EGF (HMM E-Value=7.00649e-45)
          Length = 979

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = -3

Query: 512 RIGELAPSN*ESLPTLALARAVLRG 438
           R+ ELAP+N  +L TLA ARA +RG
Sbjct: 710 RMVELAPTNQTNLATLAFARASIRG 734



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = -3

Query: 512 RIGELAPSN*ESLPTLALARAVLRGI 435
           R+ +LAP+N  +L T ALARA +RG+
Sbjct: 116 RMMDLAPTNQTTLATRALARASIRGL 141



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = -3

Query: 512 RIGELAPSN*ESLPTLALARAVLRG 438
           R+ +LAP+N  +L T ALARA +RG
Sbjct: 630 RMVDLAPTNQTTLATRALARASIRG 654



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = -3

Query: 512 RIGELAPSN*ESLPTLALARAVLRG 438
           R+ +LAP+N  +L T ALARA +RG
Sbjct: 493 RMVDLAPTNQTTLATHALARASIRG 517


>SB_55995| Best HMM Match : F5_F8_type_C (HMM E-Value=4.9e-15)
          Length = 335

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = -3

Query: 512 RIGELAPSN*ESLPTLALARAVLRGI 435
           R+ +LAP+N  +L T ALARA +RG+
Sbjct: 52  RMVDLAPTNQTTLATRALARASIRGL 77


>SB_9881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = -3

Query: 512 RIGELAPSN*ESLPTLALARAVLRG 438
           R+ +LAP+N  +L T ALARA +RG
Sbjct: 80  RMVDLAPTNQTTLATRALARASIRG 104



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -3

Query: 503 ELAPSN*ESLPTLALARAVLRG 438
           +LAP+N  +L T ALARA +RG
Sbjct: 3   DLAPTNQTTLATRALARASIRG 24


>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
          Length = 911

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 259 FSYMFTKSFACCLDGTRPRACCYVKP 336
           +++++T+  AC    TRP AC Y +P
Sbjct: 491 YAWLYTRPHACLY--TRPHACLYTRP 514



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 253 SRFSYMFTKSFACCLDGTRPRACCYVKPPPTIIRK 357
           S  ++++T+  AC    TRP AC Y +P   + ++
Sbjct: 553 SPHAWLYTRPHACLY--TRPHACLYTRPHACLYKR 585


>SB_34553| Best HMM Match : F5_F8_type_C (HMM E-Value=8.3e-22)
          Length = 667

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -3

Query: 503 ELAPSN*ESLPTLALARAVLRG 438
           +LAP+N  +L T ALARA +RG
Sbjct: 3   DLAPTNQTTLATRALARASIRG 24


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,486,523
Number of Sequences: 59808
Number of extensions: 344387
Number of successful extensions: 682
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)