Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0073
         (592 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit (...    29   1.8  
At2g33390.1 68415.m04093 expressed protein                             28   5.4  
At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein ...    27   7.1  

>At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit
           (Ath-B) nearly identical to gi:2827143, cellulose
           synthase, catalytic subunit (Ath-B)
          Length = 1065

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
 Frame = -2

Query: 480 EFANTSPSKSSAS------RNLP--SDRNRVPLRRSGELLSGLCL*AW*FTYDRGWRLHI 325
           EF+  SP + S S      + LP  SD N+ P RR  + + GL   AW    D GW++  
Sbjct: 146 EFSAASPERLSVSSTIAGGKRLPYSSDVNQSPNRRIVDPV-GLGNVAWKERVD-GWKMKQ 203

Query: 324 ATCTGSGPV*AASKRLGKHI*KSALILFPEISYNNK 217
              TG     AAS+R G  I  S  IL  E   N++
Sbjct: 204 EKNTGPVSTQAASERGGVDIDASTDILADEALLNDE 239


>At2g33390.1 68415.m04093 expressed protein 
          Length = 98

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 457 QEQCFAESTIGSESRSTETIRRATQW 380
           + QC      G  SRST+ I+R  QW
Sbjct: 38  ESQCLLPPRKGGMSRSTDKIKRTVQW 63


>At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 371

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 116 DNDDIENRQLDEVDYQINKRA-YVAEPEDE 202
           D+DD++  +LDE++  ++K +  + EP DE
Sbjct: 339 DDDDLDMDELDELEASLSKTSIQIREPNDE 368


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,200,413
Number of Sequences: 28952
Number of extensions: 241880
Number of successful extensions: 554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)