Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0071
         (706 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5UQD2 Cluster: Putative bifunctional polynucleotide ph...    33   6.8  

>UniRef50_Q5UQD2 Cluster: Putative bifunctional polynucleotide
           phosphatase/kinase (Polynucleotide
           kinase-3'-phosphatase) (DNA 5'-kinase/3'-phosphatase)
           [Includes: Polynucleotide 3'-phosphatase (EC 3.1.3.32)
           (2'(3')- polynucleotidase); Polynucleotide
           5'-hydroxyl-kinase (EC 2.7.1.78)]; n=1; Acanthamoeba
           polyphaga mimivirus|Rep: Putative bifunctional
           polynucleotide phosphatase/kinase (Polynucleotide
           kinase-3'-phosphatase) (DNA 5'-kinase/3'-phosphatase)
           [Includes: Polynucleotide 3'-phosphatase (EC 3.1.3.32)
           (2'(3')- polynucleotidase); Polynucleotide
           5'-hydroxyl-kinase (EC 2.7.1.78)] - Mimivirus
          Length = 421

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
 Frame = -2

Query: 693 IQPSVDYSTTYKYSKF*DVTTS----TLRVPIKFMTSLKNHP*LSTSCTVPFALNPQ*HS 526
           I PS+     Y  SK  D + +     L + IKF+T  + +  L +  +     N   + 
Sbjct: 176 IYPSMFKKKLYPTSKGGDFSDTDRKFALNIGIKFLTPEEFY--LDSKNSENLKTN---YK 230

Query: 525 RQGKNVINIVFRIDNAKSINFKIKPALKKTLILFGK 418
             G N   I+  I+N K +N+K KP  K+ +++ G+
Sbjct: 231 LSGVNPTEIIDEIENTKLVNYKFKPRKKEMIVMIGQ 266


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,445,448
Number of Sequences: 1657284
Number of extensions: 10342498
Number of successful extensions: 17648
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 17247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17646
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)