Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0071
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    30   0.37 
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    27   2.6  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    27   3.5  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   8.0  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 337 YSSYNPL*IRL*VYYFHQHLASLAISSFAKQNKCFF*RWFYFEV--YRFCVVYSKNDVYN 510
           Y  YN   IR  +  FH  L  + +  ++++   FF     F +   +FCV++S   VY+
Sbjct: 7   YELYNIKNIRPLIPSFHVCLLIMFLILYSQEILSFFFMCSKFSMNSLKFCVLFSFKTVYS 66

Query: 511 ILALPAMLLR 540
           +L L   L+R
Sbjct: 67  LLKLIKTLIR 76


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 424 KQNKCFF*RWFYFEVYRFCVVYS 492
           + +K FF   FY  +Y  CV+YS
Sbjct: 137 RNHKFFFLECFYLNLYSICVLYS 159


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 591 KNHP*LSTSCTVPFALNPQ*HSRQGKNVINIVFRI 487
           K+H  L+T+C +    NP   +R   +V+NIV R+
Sbjct: 160 KSHLMLATACLIALRHNPSLKARIYTDVLNIVDRL 194


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 427 QNKCFF*RWFYFEVYRFCVVYSKNDVYNI 513
           Q +C F ++   E++++C   S+++V NI
Sbjct: 175 QTECQFDKFLIVELFQYCFESSQDEVMNI 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,707
Number of Sequences: 5004
Number of extensions: 49230
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)