Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0071
(706 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.9
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 22 4.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.9
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 22 4.9
AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 21 8.6
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 21 8.6
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 485 SILKTMFITFLPCLL 529
S +K +F+ +LPCLL
Sbjct: 293 SWIKMLFLQWLPCLL 307
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 485 SILKTMFITFLPCLL 529
S +K +F+ +LPCLL
Sbjct: 293 SWIKMLFLQWLPCLL 307
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 485 SILKTMFITFLPCLL 529
S +K +F+ +LPCLL
Sbjct: 293 SWIKMLFLQWLPCLL 307
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 485 SILKTMFITFLPCLL 529
S +K +F+ +LPCLL
Sbjct: 293 SWIKMLFLQWLPCLL 307
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 485 SILKTMFITFLPCLL 529
S +K +F+ +LPCLL
Sbjct: 293 SWIKMLFLQWLPCLL 307
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 485 SILKTMFITFLPCLL 529
S +K +F+ +LPCLL
Sbjct: 293 SWIKMLFLQWLPCLL 307
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 22.2 bits (45), Expect = 4.9
Identities = 9/36 (25%), Positives = 17/36 (47%)
Frame = -1
Query: 484 QRKIYKLQNKTSVKKNTYFVWQKKKLLDWPSVGENN 377
Q + ++L K N Y++W K+++ V N
Sbjct: 128 QHEWFQLSLKNIEPYNNYYIWHPGKIVNGKRVPPTN 163
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 485 SILKTMFITFLPCLL 529
S +K +F+ +LPCLL
Sbjct: 361 SWIKMLFLQWLPCLL 375
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 485 SILKTMFITFLPCLL 529
S +K +F+ +LPCLL
Sbjct: 361 SWIKMLFLQWLPCLL 375
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 22.2 bits (45), Expect = 4.9
Identities = 9/36 (25%), Positives = 17/36 (47%)
Frame = -1
Query: 484 QRKIYKLQNKTSVKKNTYFVWQKKKLLDWPSVGENN 377
Q + ++L K N Y++W K+++ V N
Sbjct: 128 QHEWFQLSLKNIEPYNNYYIWHPGKIVNGKRVPPTN 163
>AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase
beta-3 protein.
Length = 832
Score = 21.4 bits (43), Expect = 8.6
Identities = 6/26 (23%), Positives = 15/26 (57%)
Frame = +1
Query: 460 FEVYRFCVVYSKNDVYNILALPAMLL 537
FE++ FC+V+ + + + M++
Sbjct: 209 FEIFPFCIVFGSDMIVRSIGNSLMVI 234
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.4 bits (43), Expect = 8.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 375 YLQPYS*WVIGAVS 334
+L+P S W IGA+S
Sbjct: 649 FLRPESGWAIGAMS 662
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,160
Number of Sequences: 438
Number of extensions: 3785
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -