Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0070
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    27   1.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   2.8  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    26   3.7  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   6.5  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.7  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   8.7  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   8.7  

>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +1

Query: 202 ALKLIFDMGIINSSKTSIHRNDRRRNVFQLIFHQSNNKKKKKPSFYNDMTLKVGCTRQYT 381
           ++K++ +  +I  S  SI   +   +    I    NN  +KK     D T  VGC     
Sbjct: 140 SVKVVGEHSVIYVSNNSIRMENTLHDNSVQIIDLKNNILQKKAISCLDTTNAVGCLGTLY 199

Query: 382 FAMCLFEFE 408
              C+F F+
Sbjct: 200 GQYCIFNFK 208


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 169  FVKKTNKTFTIALKLIFDMGIINSSKTSI 255
            F+ +T+KT  +ALK  FDM   N+S + +
Sbjct: 1070 FMSETSKTLNMALKSEFDMTDFNNSGSKL 1098


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 228  PHIKNKFKGDCERFVSFFYEIS 163
            P ++ KF+G  E  V+FFY ++
Sbjct: 1212 PELRKKFEGQPEHVVNFFYYVA 1233


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 482 RKQWNNYDIKIYQNVFHLTLPATL-ISNSN 396
           RK+W N + K ++N  HL   ++  +SNS+
Sbjct: 223 RKEWTNREEKYFENQLHLVKASSSDVSNSS 252


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 474 LFSLCFYENKICSIQSS 524
           L  LC+Y+NK CS  SS
Sbjct: 398 LSELCYYDNKACSSISS 414


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 364 SQLLKSCHCKRTVFFFFYYC 305
           S+ + +   K+++FFF YYC
Sbjct: 61  SRNISNTFFKKSIFFFVYYC 80


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 412 SFQIQIDTSQRYIVSYSQLLKSCH 341
           SF+IQ D   RY   Y  LLKS H
Sbjct: 865 SFEIQPDVLDRYGNEYDILLKSEH 888


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 39   IKEIKHMSDSIISNSCYAQITMVPFVLLFNLVI 137
            IK +KHM    + +    +   +PF+L FN +I
Sbjct: 1381 IKHLKHMKKESVYSKKLEEEYWLPFLLSFNEII 1413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,056
Number of Sequences: 5004
Number of extensions: 48518
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)