Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0070
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01620.2 68418.m00078 expressed protein several hypothetical ...    29   2.4  
At5g01620.1 68418.m00077 expressed protein several hypothetical ...    29   2.4  
At5g02110.1 68418.m00132 cyclin family protein low similarity to...    28   4.2  

>At5g01620.2 68418.m00078 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 449

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 223 MGIINSSKTSIHRNDRRRNVFQLIFHQSNNKKKKKPSFYNDMT 351
           + +IN ++ S +R D   +V++  +   N  + K P+ Y+D T
Sbjct: 388 VSVINITQLSEYRKDGHPSVYRKFWEPLNEDRLKNPASYSDCT 430


>At5g01620.1 68418.m00077 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 449

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 223 MGIINSSKTSIHRNDRRRNVFQLIFHQSNNKKKKKPSFYNDMT 351
           + +IN ++ S +R D   +V++  +   N  + K P+ Y+D T
Sbjct: 388 VSVINITQLSEYRKDGHPSVYRKFWEPLNEDRLKNPASYSDCT 430


>At5g02110.1 68418.m00132 cyclin family protein low similarity to
           cyclin D3.1 from [Lycopersicon esculentum] GI:5679622,
           [Nicotiana tabacum] GI:4160300; contains Pfam profiles
           PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
           C-terminal domain
          Length = 341

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 424 YRQHSFQIQIDTSQRYIVSYSQLLKSCHCKRTVFFFFYYCFDE 296
           YR H+FQ  I T  R  +SY  +  + +C     F +  C DE
Sbjct: 77  YRFHAFQWLIQTRSRLNLSYETVFSAANCFDR--FVYMTCCDE 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,723,666
Number of Sequences: 28952
Number of extensions: 223374
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)