Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0068
         (432 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5C2N8 Cluster: Putative uncharacterized protein; n=1; ...    34   1.5  
UniRef50_Q8IAT7 Cluster: Abc transporter, putative; n=7; Plasmod...    31   7.8  

>UniRef50_A5C2N8 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 472

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 350 SNYKEKCRVLSEILGPI-WVKTLRYHFNNVENDH*DTFVDKIGFTFLYIHHVFVQCNSH 177
           S+ + +CRV++     I WV+ L Y F          + D +G T++ ++ VF  C  H
Sbjct: 349 SSTEAECRVVATTATEINWVQNLLYEFQAQSPSTPTIYYDNVGATYVCVNPVFHSCMKH 407


>UniRef50_Q8IAT7 Cluster: Abc transporter, putative; n=7;
           Plasmodium|Rep: Abc transporter, putative - Plasmodium
           falciparum (isolate 3D7)
          Length = 940

 Score = 31.5 bits (68), Expect = 7.8
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 114 LGHIINHYLFLINTNLISGFVVRVALNKYMMNV*KRKTYFIHK--SVSMVVFNVIKMISK 287
           +  II+HY  +IN N    F+ +   N +  N+    +Y+  K  ++SMV+ N+IK  S 
Sbjct: 117 INKIIHHYRLIINVNENDIFIEKEIQNVF-YNIINDLSYYFDKCDTISMVLKNIIKNESL 175

Query: 288 GFH 296
            F+
Sbjct: 176 FFY 178


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 382,691,837
Number of Sequences: 1657284
Number of extensions: 6894349
Number of successful extensions: 11188
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11188
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21075479950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)