Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0068
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42132| Best HMM Match : DAGK_cat (HMM E-Value=1.3e-35)              29   2.2  
SB_31609| Best HMM Match : Peptidase_M16_C (HMM E-Value=5.7e-08)       28   2.8  
SB_8199| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.0  
SB_48386| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  

>SB_42132| Best HMM Match : DAGK_cat (HMM E-Value=1.3e-35)
          Length = 558

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 167 GFRSESCIEQIHDECIKT*NLFYPQKCL 250
           G   E+C   +HDEC++T N  +  K L
Sbjct: 166 GLHCENCTLSVHDECLETANEVFTCKAL 193


>SB_31609| Best HMM Match : Peptidase_M16_C (HMM E-Value=5.7e-08)
          Length = 456

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 272 NNVENDH*DTFVDKIGFTFLYIH 204
           + +END  DTF D + + FLY H
Sbjct: 245 DKIENDPHDTFADLVIYDFLYSH 267


>SB_8199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 341 KEKCRVLSEILGPIW-VKTLRYHFNNVENDH*DTFVDKIGFTFLYIHHVFVQ 189
           K++ R LS  L  +  +K  + +     +D  D F+ K GFTF+ I  +F++
Sbjct: 22  KKRARGLSPSLPSLEPLKQAKVYEAEGRDDRFDVFILKEGFTFVCIFRIFIE 73


>SB_48386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 717

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +2

Query: 176 SESCIEQIHD--ECIKT*NLFYPQK 244
           +E+CI Q+ +  EC+K  N+FY +K
Sbjct: 567 TEACISQLKELQECLKEENVFYQEK 591


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,625,103
Number of Sequences: 59808
Number of extensions: 211004
Number of successful extensions: 324
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)