Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0068
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73910-5|CAI79219.1|  124|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U41278-3|AAK31512.1|  453|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF077544-2|AAK39243.2|  644|Caenorhabditis elegans Hypothetical ...    27   5.8  
AF068716-4|ABQ13068.1|  128|Caenorhabditis elegans Hypothetical ...    27   5.8  

>Z73910-5|CAI79219.1|  124|Caenorhabditis elegans Hypothetical
           protein M117.6 protein.
          Length = 124

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 198 YMMNV*KRKTYFIHKSVSMVVFNVIKMISKGFHPNRTQNFA*YATFLFVIRGAI 359
           +  N+ +   +F+ KS  +++FNV   ++  F   R Q F  Y+T    IR  +
Sbjct: 29  FFPNLMEFSVFFLAKSTFILIFNVFMKLNNCFQVFRYQRFLQYSTCCSRIRRTV 82


>U41278-3|AAK31512.1|  453|Caenorhabditis elegans Hypothetical
           protein F33G12.4 protein.
          Length = 453

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 323 LSEILGPIWVKTLRYHFNNVENDH*DTFVDKIG 225
           L E +GPI+++ L    +N+E  H +  VDK+G
Sbjct: 309 LEEEIGPIFIRRLLTKVDNIEYTH-EGGVDKLG 340


>AF077544-2|AAK39243.2|  644|Caenorhabditis elegans Hypothetical
           protein H22K11.2 protein.
          Length = 644

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 211 YKNVKPILSTKVSQWSFSTLLK*YRRVFTQIGPKISLNTRHF 336
           Y++  P   T+V+QW    L K Y  +    GP + +   HF
Sbjct: 145 YRSSDPSFMTEVTQWWKHLLPKIYPLMRKNAGPVLMVQIEHF 186


>AF068716-4|ABQ13068.1|  128|Caenorhabditis elegans Hypothetical
           protein F26D11.12 protein.
          Length = 128

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -1

Query: 420 CTKHN*SSIKNIELMMLIPNKSHL*LQREMSRIKRNFGSY 301
           C K +  ++ N+E + LI NK+ +  ++E+  +K+ F  +
Sbjct: 54  CKKEHTIALANLESLKLILNKNSIGQRKEIDELKQLFNGF 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,122,161
Number of Sequences: 27780
Number of extensions: 178769
Number of successful extensions: 342
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)