Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0068
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38350.1 68417.m05422 patched family protein similar to SP|O1...    27   5.5  
At4g01420.1 68417.m00182 calcineurin B-like protein 5 (CBL5) ide...    26   9.6  

>At4g38350.1 68417.m05422 patched family protein similar to
           SP|O15118 Niemann-Pick C1 protein precursor from Homo
           sapiens (PID:g2276463); contains Pfam profile PF02460
           Patched family
          Length = 1064

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 345 LQREMSRIKRNFGSYLGENPSI 280
           +QR M++  R++GS++  NPS+
Sbjct: 288 VQRYMAKFYRSYGSWIARNPSL 309


>At4g01420.1 68417.m00182 calcineurin B-like protein 5 (CBL5)
           identical to calcineurin B-like protein 5 (GI:9965366)
           [Arabidopsis thaliana]; similar to N. crassa calcineurin
           calcium-regulated protein phosphatase, GenBank accession
           number P87072
          Length = 203

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -3

Query: 196 LFNATLTTKPEIKFVLIKNK**LIICPNRI--LFHLRNTLIPIPFGNY---FNIF 47
           L N  L TK + +F+LIKN     +   RI  LF +RN    I FG +    NIF
Sbjct: 45  LSNDNLLTKEKFQFILIKNTKKRSLSAERIFGLFDMRND-GAIDFGEFVHTLNIF 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,340,026
Number of Sequences: 28952
Number of extensions: 154653
Number of successful extensions: 245
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)