Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0067
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    26   3.6  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   6.2  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   6.2  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   8.3  

>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 199 MRNGYCSSQLGSRLFSRQCYAHG 131
           ++ G C +Q+GS+ + + C  HG
Sbjct: 8   LQAGQCGNQIGSQFWQQLCLEHG 30


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 147 CRLN-SLEPNWELQYPFLMISLKLQVNLKKTQQQF 248
           CRLN S +PN ++ +   ++ L  + ++KK +Q F
Sbjct: 190 CRLNHSCDPNCQIIFDGAIVQLVSKRDIKKDEQLF 224


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 60  CLFLLKISFISK*RSWRSSVY*NLPCA*HCRLNSLEPNWELQYPFLMISLK 212
           C F L I ++   R+   S++ +LP      LN L+ + +L  P+  +S+K
Sbjct: 81  CFFCLLIDYLGGERAAVISLHGHLPRPRLWPLNYLQDDIDLSDPYTFLSIK 131


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 339 VASVTFSASGFTFLSSVLVSTAEVVFCF 256
           +A   F  +GFTF+  +L+ T     CF
Sbjct: 109 MALYCFRWTGFTFIEGILICTGLTGLCF 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,295
Number of Sequences: 5004
Number of extensions: 30536
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)