Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0067
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical p...    27   7.5  
AF101318-2|AAK68599.1|  331|Caenorhabditis elegans Seven tm rece...    27   10.0 

>Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical
           protein T10C6.4 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 247 NCCCVFFRFTWSLRDIMRNGYCSSQL 170
           NC   FF+F W   +  RN  C ++L
Sbjct: 136 NCSFPFFQFGWVFMEAQRNETCGAKL 161


>AF101318-2|AAK68599.1|  331|Caenorhabditis elegans Seven tm
           receptor protein 66 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 195 LMISLKLQVNLKKTQQQFSLRNKTQLLQ*ILRLMI 299
           +  SLK+  N+KK  ++FS++N+    Q  + L+I
Sbjct: 214 IFCSLKMHFNMKKELEKFSVQNQNLQRQYFIALVI 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,638,490
Number of Sequences: 27780
Number of extensions: 180110
Number of successful extensions: 571
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)