Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0066
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    36   0.003
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    28   1.2  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   2.0  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    26   3.5  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   4.7  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   6.2  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   8.1  

>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
 Frame = +2

Query: 257 KALGIQEMKHFVATKLQQVTLFKQNLVNHVLACETIISEMSNR-FENLKLTETEMLNNRN 433
           +A  + +++ FV+ KL  +     +L  H    ET++    N  F+ L   +  ++++ +
Sbjct: 310 QAKTVNQIRDFVS-KLGSLQSEHTSLNIHTGLAETLVQHTKNNYFQKLLQLQHLLVSHAD 368

Query: 434 KKTNYNFLDENFGTEIHIYNSLRLMCLLSLT 526
             T +N LDE    E  +    R++CL S+T
Sbjct: 369 SFTQFNLLDEIIYAEAPVEEVFRVLCLASIT 399


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -1

Query: 399 FRFSNLLLISDIIVSQANTWFTRFCLKRVTCWSLVATKCFISCI 268
           FRFS   ++ ++++S +  +F  F  + +  W + A +  +S I
Sbjct: 849 FRFSFSFILYNLLISTSTVFFAGFFRRHLMVWKVFAPRFMLSGI 892


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 566 Y*LMYCIHHKTNLVLSLTNTSDANYY 489
           Y L  C+HH+  ++L + + SDA+ +
Sbjct: 618 YGLFLCLHHEQRILLDMNSFSDAHRF 643


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = -2

Query: 209 GLQRNVCVISQHTDYL*NYLKALLYFYFHCFVHYQNXXXXXXXXXX*HSNPEI 51
           GL+++     Q+  +L N +KA+   +   F+H+++           H  P+I
Sbjct: 214 GLRKDRVRGEQYDSFLDNVIKAIREVFPEAFIHFEDFGLANAKRILDHYRPDI 266


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 305  QQVTLFK-QNLVNHVLACETIISEMSNRFENLKLTETEMLNNRNKKTNYNFLDENFGTEI 481
            +Q+ +F+ ++++N +   +T I       E+L+  +  +L   NK+  YN L+E+     
Sbjct: 915  EQINIFRPKDILNLMPVIKTCIPYSGLAQESLEACKACLLQG-NKELCYNLLNESLSLHE 973

Query: 482  HIYNSL 499
             IY  L
Sbjct: 974  QIYGVL 979


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/68 (22%), Positives = 26/68 (38%)
 Frame = +2

Query: 290  VATKLQQVTLFKQNLVNHVLACETIISEMSNRFENLKLTETEMLNNRNKKTNYNFLDENF 469
            ++ ++    L    L   V AC+ +++    R   LK     + NN  +K N      N 
Sbjct: 842  ISERIPSAELEISKLQLDVSACDRLVAGEERRILQLKSDLKSIRNNNERKRNLQNKISNM 901

Query: 470  GTEIHIYN 493
              E+   N
Sbjct: 902  DKEVEAIN 909


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 41  INCGFLDLNVKDTKVMKGKLNFDSEQSNES-KSTAMPLDSS 160
           ++C  LD +   +K +  K+N  S QS+ S ++++  L SS
Sbjct: 260 VSCSMLDSSSTLSKSVNSKINLKSHQSSSSVQNSSRKLTSS 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,059
Number of Sequences: 5004
Number of extensions: 39122
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)