Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0066
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0145 + 1204021-1204296,1204430-1204492,1204667-1204795,120...    28   6.3  
11_01_0461 + 3569700-3572373,3572477-3572847                           27   8.3  

>11_01_0145 +
           1204021-1204296,1204430-1204492,1204667-1204795,
           1205778-1205834,1205915-1206213,1206539-1206630,
           1206747-1206961,1207142-1207325,1207447-1207541,
           1208572-1208628,1209372-1209426,1209955-1210079
          Length = 548

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 470 GTEIHIYNSLRLMCLLSLTQGLS-YDEYNTLVNKY 571
           GT +H++   R+M LL +   +  + +  TL+NKY
Sbjct: 66  GTRVHVFRFDRMMDLLKIGDDIEVFAKNKTLINKY 100


>11_01_0461 + 3569700-3572373,3572477-3572847
          Length = 1014

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 24/91 (26%), Positives = 41/91 (45%)
 Frame = +2

Query: 281  KHFVATKLQQVTLFKQNLVNHVLACETIISEMSNRFENLKLTETEMLNNRNKKTNYNFLD 460
            K F+A       +  +NLV  + AC +I S+  N F+ L + +     + +     N  D
Sbjct: 743  KSFIAECKTLRNVRHRNLVPILTACSSIDSQ-GNDFKAL-VYQFMSQGDLHMMLYSNQDD 800

Query: 461  ENFGTEIHIYNSLRLMCLLSLTQGLSYDEYN 553
            EN    IHI  + RL  ++ +   + Y  +N
Sbjct: 801  ENGSASIHIAFAQRLSIVVDVADAMEYVHHN 831


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,874,687
Number of Sequences: 37544
Number of extensions: 190852
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)