Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0066
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38159| Best HMM Match : Peptidase_M28 (HMM E-Value=4.7e-09)         33   0.17 
SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32)                   29   2.8  
SB_30144| Best HMM Match : CRA_rpt (HMM E-Value=9.7)                   29   3.7  
SB_12773| Best HMM Match : DUF1480 (HMM E-Value=2.1)                   28   4.9  
SB_46583| Best HMM Match : Hus1 (HMM E-Value=0)                        28   6.4  
SB_6538| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_191| Best HMM Match : Choline_kin_N (HMM E-Value=1)                 28   6.4  
SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_38159| Best HMM Match : Peptidase_M28 (HMM E-Value=4.7e-09)
          Length = 1049

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 244 KRRHKSIRYTRNEALCCDQTP 306
           KRRHK  R   NE LCC+ TP
Sbjct: 398 KRRHKERRTQMNERLCCESTP 418


>SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32)
          Length = 584

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/49 (24%), Positives = 28/49 (57%)
 Frame = +2

Query: 269 IQEMKHFVATKLQQVTLFKQNLVNHVLACETIISEMSNRFENLKLTETE 415
           + +++  +ATK +Q++ F+  L  +    E  ++ + +R+EN K  + E
Sbjct: 434 VVKLQSLLATKREQISTFRTVLKANKSTYEVALANLKSRYENDKAVQAE 482


>SB_30144| Best HMM Match : CRA_rpt (HMM E-Value=9.7)
          Length = 94

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 257 KALGIQEMKHFVATKLQQVTLFKQNLVNHVLACE 358
           ++ G+++  HF+ + L    + +Q +   VLACE
Sbjct: 53  RSTGLRDRLHFIVSTLSSTNILQQGIEAMVLACE 86


>SB_12773| Best HMM Match : DUF1480 (HMM E-Value=2.1)
          Length = 505

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -1

Query: 348 NTWFT--RFCLKRVTC-WSLVATKCFISCIPNAFMSSFLSNLALELRTLRTSEKCLCYI 181
           N W T     LK +T  + L  TKC  S      +S  L+   + L     + KC+CYI
Sbjct: 237 NVWRTAPNVILKSITDQFELCLTKCRTSSKVREIISQELAERLMSLPPKSEATKCICYI 295


>SB_46583| Best HMM Match : Hus1 (HMM E-Value=0)
          Length = 646

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 539 KTNLVLSLTNTSDANYYKCEFQSRSFHQGSYNWSFCFYYSTFQSQLILD 393
           K+NL  S  N S  ++    F      +G+  ++ CFY   F S +++D
Sbjct: 235 KSNLDFSDKNLSGLSFAHTTFAHNVSFEGAILFNTCFYGCEFASHVVVD 283


>SB_6538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 927

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 338 NHVLACETIISEMSNRFENLKLTETEMLNNRNKK 439
           +++L CETI+ E+  + ++L+  + EM     +K
Sbjct: 21  DYILVCETILCELEGQIKSLEDRQQEMEKEEKRK 54


>SB_191| Best HMM Match : Choline_kin_N (HMM E-Value=1)
          Length = 163

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 282 FISCIPNAFMSSFLSNLALELRTLRTSEKCLC 187
           F+ C P +F S+ L+N+  E   +     C+C
Sbjct: 97  FMHCFPMSFASTRLTNIDAETTRMAIERHCMC 128


>SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2103

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 247  RRHKSIRYTRNEALCCDQTPTSD 315
            RR+  +RYTR +A  CDQ   +D
Sbjct: 1501 RRNADLRYTRRDADLCDQQRKAD 1523


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,650,548
Number of Sequences: 59808
Number of extensions: 243179
Number of successful extensions: 665
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)