Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0062
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.34 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.79 
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   1.4  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   1.4  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   1.4  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   1.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.2  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   5.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   5.6  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   5.6  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   5.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   5.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   5.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   5.6  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   5.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.4  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   7.4  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   7.4  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   7.4  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   7.4  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   7.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 29  SLPIKHLIPVTPRKQNSQPQPEFSAQP 109
           SL +K ++P+ P+  +    P+F  QP
Sbjct: 3   SLSLKDILPLNPKLYDKHRAPKFLGQP 29


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 71  QNSQPQPEFSAQPQKEAVYVNQEP 142
           Q++ PQ +  AQPQ++     Q+P
Sbjct: 818 QSTHPQAQAQAQPQQQQQQQQQQP 841



 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 62   PRKQNSQPQPEFSAQPQKEAVYVNQE 139
            P++Q+ QPQ +   QPQ++     Q+
Sbjct: 1517 PQQQSQQPQQQ-QPQPQQQQQQQQQQ 1541



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 65   RKQNSQPQPEFSAQPQKEAVYVNQEP 142
            + Q  QPQ +   Q Q++    +Q+P
Sbjct: 1499 KTQQQQPQQQQQQQQQQQPQQQSQQP 1524



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 71   QNSQPQPEFSAQPQKEAVYVNQEPIY 148
            Q  QPQP+   Q Q++     Q+  Y
Sbjct: 1525 QQQQPQPQQQQQQQQQQQPQQQQKEY 1550


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           P+YY    P+S+ PW+
Sbjct: 120 PVYYGNFPPRSMGPWI 135


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           P+YY    P+S+ PW+
Sbjct: 120 PVYYGNFPPRSMGPWI 135


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           P+YY    P+S+ PW+
Sbjct: 120 PVYYGNFPPRSMGPWI 135


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           P+YY    P+S+ PW+
Sbjct: 353 PVYYGNFPPRSMGPWI 368


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           PIYY    P+ + PW+
Sbjct: 343 PIYYGNFPPRPMGPWI 358


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 13/50 (26%), Positives = 19/50 (38%)
 Frame = +2

Query: 122  VYVNQEPIYYCPDSPKSIPPWVXXXXXXXXXXXXVWCQRPLDGKKSPPRE 271
            V+V   P +Y P  PK+ P  +             W  R  + K+ P  E
Sbjct: 950  VFVRSAPNFYMPSEPKA-PMILVGPGTGIAPFRGFWHHRLAEIKRRPDLE 998


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           P+YY    P+ + PW+
Sbjct: 132 PVYYGNFPPRPMGPWI 147


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           P+YY    P+ + PW+
Sbjct: 132 PVYYGNFPPRPMGPWI 147


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           P+YY    P+ + PW+
Sbjct: 132 PVYYGNFPPRPMGPWI 147


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           P+YY    P+ + PW+
Sbjct: 122 PVYYGNFPPRPMGPWI 137


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           P+YY    P+ + PW+
Sbjct: 127 PVYYGNFPPRPMGPWI 142


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           P+YY    P+ + PW+
Sbjct: 127 PVYYGNFPPRPMGPWI 142


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           P+YY    P+ + PW+
Sbjct: 127 PVYYGNFPPRPMGPWI 142


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           P+YY    P+ + PW+
Sbjct: 357 PVYYGNFPPRPMGPWI 372


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
          protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 59 TPRKQNSQPQPE 94
          +P+K+N  PQP+
Sbjct: 24 SPKKRNKNPQPK 35


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           P+YY    P+ + PW+
Sbjct: 120 PVYYGNFLPRPMGPWI 135


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           P+YY    P+ + PW+
Sbjct: 123 PVYYGNFLPRPMGPWI 138


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           P+YY    P+ + PW+
Sbjct: 123 PVYYGNFLPRPMGPWI 138


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           P+YY    P+ + PW+
Sbjct: 123 PVYYGNFLPRPMGPWI 138


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           P+YY    P+ + PW+
Sbjct: 123 PVYYGNFLPRPMGPWI 138


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 459 EVELFPYKWKFPALKLG 509
           +VE FPY  +   LKLG
Sbjct: 156 DVEFFPYDVQTCVLKLG 172


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 140 PIYYCPDSPKSIPPWV 187
           PIY     P+S+ PW+
Sbjct: 368 PIYCGNFPPRSMEPWI 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,430
Number of Sequences: 438
Number of extensions: 3259
Number of successful extensions: 27
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)