Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0061
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    46   5e-06
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    28   1.2  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    27   3.6  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   3.6  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    26   4.7  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 26/56 (46%), Positives = 30/56 (53%)
 Frame = +1

Query: 37  TFGEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTASTNIIEK 204
           T GEG HNYHH FP DYR       Y + T  FI   +  G AY+L T   N I+K
Sbjct: 278 TLGEGNHNYHHAFPNDYRNGLRWYEY-DPTKIFIYIASLFGLAYNLNTFPDNEIQK 332


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -1

Query: 177 FQIISPSHPCKEIYEPCCQIYVPVPQFVCPIIPRKNVM 64
           ++ ++   PCK +  P C I      ++CP   ++N++
Sbjct: 51  YEPVTCKAPCKAVLNPYCHIDTRAKFWICPFCLQRNML 88


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 198 NNIGGSS-FQIISPSHPCKE 142
           NNI     F +I P HPCKE
Sbjct: 414 NNIADDDLFDVILPKHPCKE 433


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +3

Query: 210 TKNRGWDLQTTKWNELKQSSKSFFA*YHFFDDFCKVIQKQASGISY 347
           TK++ W     +W+++ +  +   A   F D +C++  +   G+SY
Sbjct: 638 TKDQEWRRSKREWSKIWRQIEKKNAQAAFDDRYCRIEGRDRRGLSY 683


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 19  GMANAFTFGEGFHNYHHVFPW 81
           G  N F +  G+H  HH FP+
Sbjct: 278 GPLNFFVYNAGYHIEHHDFPY 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,635
Number of Sequences: 5004
Number of extensions: 59652
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)