Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0061
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0986 - 33602714-33602741,33603037-33603146,33603401-336036...    31   0.93 
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    29   4.9  
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    28   6.5  
02_04_0658 - 24793219-24794109                                         28   6.5  

>01_06_0986 -
           33602714-33602741,33603037-33603146,33603401-33603601,
           33604605-33604697,33604937-33605182,33606007-33606372,
           33606459-33606599,33607170-33607526
          Length = 513

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 6   KATKWHGKCIYFW*RISQLPSRFSVGLSGRRIGGQVHKFDNKVHRFLCMD 155
           +A +W G C Y     ++    F  G  G   GG +H   NK H + C+D
Sbjct: 85  RAAEWKGACFYD----NRAWMEFHNGTDGGLGGGTLHLETNKAHSWTCID 130


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 159 SHPCKEIYEPCCQIYVPVPQFVCPIIPRKNVMVIVKSFTKSKCICHA 19
           + PC+E   PC ++  P     CP+    N     K+  K  C C A
Sbjct: 571 AEPCEECNLPCQRVREPPCSHPCPLPCHLNDCPPCKALVKRPCHCGA 617


>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
            3764013-3764961,3766967-3767064,3768144-3768284,
            3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -1

Query: 198  NNIGGSSFQIISPSHPCKEIYEPCCQIYVPVPQFVCPIIPRKNVMVIVKSFTKSKCICHA 19
            +N+ GSS +   P      I   CC+I V   Q VC     KN   + ++     C C+ 
Sbjct: 1326 SNVAGSSLETHVPMQEPLRIASSCCEI-VNADQ-VCAGEVGKNSFSLDENGGYVTCPCNT 1383

Query: 18   TW 13
            TW
Sbjct: 1384 TW 1385


>02_04_0658 - 24793219-24794109
          Length = 296

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +1

Query: 484 IKGTLLYLHKRVKFPSFVTVILLSKAFVYFIEYEFLNAI*AFLSYIKIISPYWALLENLI 663
           IK   L LH    F     +++++    Y + + F   + A L +I I+ PYW +     
Sbjct: 222 IKKFSLRLHLLFSF----ALMIMTLGVTYQLHHMFFILLLALLVFISIVCPYWLIRIQEY 277

Query: 664 VFEI 675
            FEI
Sbjct: 278 KFEI 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,626,544
Number of Sequences: 37544
Number of extensions: 317577
Number of successful extensions: 615
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)