Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0058
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    95   5e-21
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   1.6  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   6.6  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 95.5 bits (227), Expect = 5e-21
 Identities = 48/88 (54%), Positives = 59/88 (67%)
 Frame = +2

Query: 44  LQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 223
           +   F+QAAA+VK LK  P   +LL LYA FKQATVGD +   +PGLLDLKGK K++AW 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWE 59

Query: 224 KLAGTSKEDAQKAYIEIVEGLIASIGLK 307
           +L G SKEDA   YI  V+ L    G+K
Sbjct: 60  ELKGKSKEDAASEYISFVDELKTKYGMK 87


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
 Frame = +2

Query: 56   FDQAAANVKNLKALPTDAQLLNLYAHFKQ--ATVGDADPANRPGLLD-LKGKAKFDAWHK 226
            F Q AA+++    +  DA LLN+Y +F+Q  + V +A    +  L + +K +    +W  
Sbjct: 3302 FSQHAASLRICHGI--DAMLLNIYHYFEQFLSKVSEAIHTQKQSLENSIKERILLMSWKD 3359

Query: 227  L-AGTSKEDAQKAYIEIVEGL 286
                  KE A+K++ E+ + L
Sbjct: 3360 TNVYALKESAKKSHAELFKVL 3380


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 437 HFCLKCFFFKNTNSY 481
           H+CLKCF  K   SY
Sbjct: 400 HYCLKCFQVKPPRSY 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,657
Number of Sequences: 5004
Number of extensions: 47521
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)