Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0058
(616 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic... 70 1e-12
At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2) iden... 46 2e-05
At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / AC... 44 1e-04
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar... 36 0.028
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar... 36 0.028
At3g13620.1 68416.m01714 amino acid permease family protein weak... 29 3.2
At1g61370.1 68414.m06916 S-locus lectin protein kinase family pr... 27 9.9
>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
to acyl-CoA-binding protein (ACBP) [Arabidopsis
thaliana] SWISS-PROT:P57752
Length = 92
Score = 70.1 bits (164), Expect = 1e-12
Identities = 35/84 (41%), Positives = 51/84 (60%)
Frame = +2
Query: 38 MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 217
M L+E+F++ A V L LP++ LL LY +KQA G D +RPG+ +K +AK+DA
Sbjct: 1 MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVD-TSRPGMFSMKERAKWDA 59
Query: 218 WHKLAGTSKEDAQKAYIEIVEGLI 289
W + G S E+A YI V+ L+
Sbjct: 60 WKAVEGKSSEEAMNDYITKVKQLL 83
>At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2)
identical to acyl-CoA binding protein 2 [Arabidopsis
thaliana] gi|12039034|gb|AAG46057
Length = 354
Score = 46.0 bits (104), Expect = 2e-05
Identities = 29/77 (37%), Positives = 40/77 (51%)
Frame = +2
Query: 56 FDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAG 235
F AA + + +P+D Q LY +K AT G A +P L + +AK+ AW KL
Sbjct: 114 FVTTAAADRLSQKVPSDVQQ-QLYGLYKIATEGPCT-APQPSALKMTARAKWQAWQKLGA 171
Query: 236 TSKEDAQKAYIEIVEGL 286
E+A + YIEIV L
Sbjct: 172 MPPEEAMEKYIEIVTQL 188
>At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / ACBP,
putative similar to acyl-CoA binding protein 2
[Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 338
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/77 (35%), Positives = 41/77 (53%)
Frame = +2
Query: 56 FDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAG 235
F AAA+ + + + + QL LY +K AT G A +P L + +AK+ AW KL
Sbjct: 104 FVAAAASDRLSQKVSNELQL-QLYGLYKIATEGPCT-APQPSALKMTARAKWQAWQKLGA 161
Query: 236 TSKEDAQKAYIEIVEGL 286
E+A + YI++V L
Sbjct: 162 MPPEEAMEKYIDLVTQL 178
>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 669
Score = 35.5 bits (78), Expect = 0.028
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = +2
Query: 59 DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGT 238
D +A NV + P D LL LYA ++QATVG + +P ++K+ +W L
Sbjct: 29 DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTM 84
Query: 239 SKEDAQKAYIEIVE 280
+A + +++I+E
Sbjct: 85 PSIEAMRLFVKILE 98
>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 668
Score = 35.5 bits (78), Expect = 0.028
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = +2
Query: 59 DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGT 238
D +A NV + P D LL LYA ++QATVG + +P ++K+ +W L
Sbjct: 29 DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTM 84
Query: 239 SKEDAQKAYIEIVE 280
+A + +++I+E
Sbjct: 85 PSIEAMRLFVKILE 98
>At3g13620.1 68416.m01714 amino acid permease family protein weak
similarity to SP|Q9WTR6 Cystine/glutamate transporter
(Amino acid transport system xc-) {Mus musculus};
contains Pfam profile PF00324: Amino acid permease
Length = 478
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 129 AYKLRSWASVGRAFRFFTLAAAWSNFSWRDILI 31
AY+L A +G +FF + + W N W ILI
Sbjct: 314 AYQLEGMAELGFLPKFFGVRSKWFNTPWVGILI 346
>At1g61370.1 68414.m06916 S-locus lectin protein kinase family
protein contains Pfam domains, PF00954: S-locus
glycoprotein family, PF00069: Protein kinase domain, and
PF01453: Lectin (probable mannose binding)
Length = 814
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -2
Query: 255 WASSFEVPASLCQASNLALPFKSRRPGLLAGSASPTVACLK 133
W + E P S C N PF GL S P CLK
Sbjct: 275 WVTDLEAPVSSCDVYNTCGPF-----GLCIRSNPPKCECLK 310
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,552,886
Number of Sequences: 28952
Number of extensions: 240542
Number of successful extensions: 609
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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