Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0056
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 252 1e-67
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 247 4e-66
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 244 4e-65
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 44 6e-05
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 44 6e-05
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ... 32 0.20
At4g00450.1 68417.m00062 expressed protein 30 1.1
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 5.7
At3g45860.1 68416.m04963 receptor-like protein kinase, putative ... 27 7.5
At2g42730.1 68415.m05292 F-box family protein contains F-box dom... 27 7.5
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 27 7.5
At2g02610.1 68415.m00200 DC1 domain-containing protein contain... 27 7.5
At1g70380.1 68414.m08096 F-box family protein contains Pfam PF00... 27 7.5
At1g44130.1 68414.m05097 nucellin protein, putative similar to n... 27 7.5
At5g58575.1 68418.m07339 expressed protein 27 9.9
At2g38630.1 68415.m04745 expressed protein 27 9.9
At1g53170.1 68414.m06025 ethylene-responsive element-binding fac... 27 9.9
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 252 bits (616), Expect = 1e-67
Identities = 113/160 (70%), Positives = 137/160 (85%)
Frame = +3
Query: 36 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 215
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 216 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 395
V FR P++FK +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +
Sbjct: 61 VTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHV 120
Query: 396 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPS 515
GDRG LARASG++A VI HNPD+ TR+KLPSG+KK++PS
Sbjct: 121 GDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPS 160
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 247 bits (604), Expect = 4e-66
Identities = 110/160 (68%), Positives = 135/160 (84%)
Frame = +3
Query: 36 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 215
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 216 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 395
V FR P++FK +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +
Sbjct: 61 VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHV 120
Query: 396 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPS 515
GDRG ARASG++A VI HNPD +R+KLPSG+KK++PS
Sbjct: 121 GDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPS 160
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 244 bits (596), Expect = 4e-65
Identities = 110/161 (68%), Positives = 136/161 (84%), Gaps = 1/161 (0%)
Frame = +3
Query: 36 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 212
MGRVIRAQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60
Query: 213 VVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEK 392
V FR P+++ +KELF+A EG+YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E
Sbjct: 61 RVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELH 120
Query: 393 MGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPS 515
+GDRG LARASG++A VI HNP++ TRVKLPSG+KK+LPS
Sbjct: 121 VGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPS 161
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 44.0 bits (99), Expect = 6e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +3
Query: 327 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKK 503
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTK 116
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 44.0 bits (99), Expect = 6e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +3
Query: 327 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKK 503
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTK 116
>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 32.3 bits (70), Expect = 0.20
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 386 FKIAHNGTLRHSSNRH-HISNFKSCFLSTINKLACVEPFGSNEELLPCLELVWI 228
FK + T+ H S+RH H+S K S+ K AC P GS+ L C E +I
Sbjct: 363 FKRNDDNTIDHFSHRHNHMSLDKGGEESSFCK-ACAHPIGSSSSLYKCSECSFI 415
>At4g00450.1 68417.m00062 expressed protein
Length = 2124
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -2
Query: 398 THFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACV-EPFGSNEELLPCLELVWIAE 222
TH+L K+ GT++ S + ++ + + C+ + G+ +E P L ++
Sbjct: 1149 THYLKKLIGTGTMKASLAEKNDDGYQVAQQIVVGLMDCIRQTGGAAQEGDPSLVSSAVSA 1208
Query: 221 VYNSQRCTSTRVMDYILNN 165
+ NS + R+ D+ L N
Sbjct: 1209 IINSVGLSVARITDFSLGN 1227
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 437 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 324
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
>At3g45860.1 68416.m04963 receptor-like protein kinase, putative
similar to receptor-like protein kinase 4 (gi:13506745),
5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
thaliana; contains Pfam protein kinase domain PF00069
Length = 676
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -2
Query: 407 TSITHFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACVEPFGSNEE 258
+++T+ I NG SSN++ + F+ ST+N LA VE S+++
Sbjct: 137 STVTYDGSAILLNGANISSSNQNQVDEFRDLVSSTLN-LAAVEAANSSKK 185
>At2g42730.1 68415.m05292 F-box family protein contains F-box domain
Pfam:PF00646
Length = 737
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -2
Query: 260 ELLPCLELVWIAEVYNSQRCTSTRVM 183
E LPCLELV I V NS +T M
Sbjct: 408 EKLPCLELVKICVVNNSNNLQTTMEM 433
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 462 HQDCVQSQWRSFQRHVPDDLYHPFSLQDCTQW 367
H+ Q WRS + HV D+L P ++C W
Sbjct: 667 HKFFKQVMWRSSKVHVADELQLP-PQEECVSW 697
>At2g02610.1 68415.m00200 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 383 KIAHNGTLRHSSNRHHIS-NFKSCFLSTINKLACVEPFGSNEELLPCLELVWI 228
KIA NG + H S+RHH+ + F+ ACV P + C+E +I
Sbjct: 339 KIA-NGVILHFSHRHHLKFDISGVFVGNKFCQACVLPINEG-NVYVCVECDFI 389
>At1g70380.1 68414.m08096 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 377
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 264 IAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 395
+ EGL+ G F+Y G +++ VM E V L E++
Sbjct: 209 VTDEGLFNGGFLYYGARSSCNKPMVMRFNVSSEAFAVIKLPEEV 252
>At1g44130.1 68414.m05097 nucellin protein, putative similar to
nucellin GI:2290202 from [Hordeum vulgare]
Length = 405
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +2
Query: 191 W*RCTFGC--CTLPRSIQVQDKEGALHCSR---RALHRP 292
W +C C CTLP ++Q + K + CS ALH P
Sbjct: 74 WVQCDAPCSGCTLPPNLQYKPKGNIIPCSNPICTALHWP 112
>At5g58575.1 68418.m07339 expressed protein
Length = 181
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 324 EVGNVMPVGA-MPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 473
EV N M G + G +LE+ MG +GR ARA +T N +A+R+
Sbjct: 91 EVFNCMNCGRQIVAGRFAPHLEKCMG-KGRKARAKTTRSTTAAQNRNARRS 140
>At2g38630.1 68415.m04745 expressed protein
Length = 467
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -2
Query: 332 SNFKSCFLSTINKLACVEPF-GSNEELLPCLELVWIAEVYNSQRCTSTRVMDYILNNSLD 156
+N K CFL+ F N + L + V+ ++ Y+S +C STR+ +YIL D
Sbjct: 117 TNKKVCFLNVSPDEVIRSLFYNKNNDSLITVS-VYASDNYSSLKCRSTRI-EYILRGQAD 174
>At1g53170.1 68414.m06025 ethylene-responsive element-binding factor
8 / ERF transcription factor 8 (ERF8) identical to ERF
transcription factor 8 GI:10567108 from [Arabidopsis
thaliana]
Length = 185
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 408 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLP 512
R +A NF ++G +P T V P+ A+ + P
Sbjct: 78 RGVKAKTNFGVIVGSSPTQSSTVVDSPTAARFITP 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,835,873
Number of Sequences: 28952
Number of extensions: 251261
Number of successful extensions: 684
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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