Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0053
(515 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 0.95
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 26 2.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 3.8
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 5.1
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 25 5.1
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 5.1
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.7
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces... 25 6.7
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 8.9
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 25 8.9
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.9 bits (59), Expect = 0.95
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +3
Query: 255 NSSVDLLTSSET*FRKALTTITNPSLRSG*DLVSSSFCTILATWKSS*VVTFTSIKLRNT 434
+SS + TSS + F ++TTI++ S SS +IL++ SS T SI +T
Sbjct: 540 SSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSST 599
Query: 435 VSSNHGSET 461
S+ + T
Sbjct: 600 SSTFSSAST 608
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 2.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 263 GGSADIFRNIVQKSADYD 316
GG +FR + KS+DYD
Sbjct: 216 GGGRKLFRKVANKSSDYD 233
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 68 SYTNAENVVPTSTFSAINLFYVLLVPAVILWYAYWRMSRRRLYELADKLN 217
S +N NV +T S I LF+ + + + +W+ R L L D+L+
Sbjct: 252 SLSNLVNVWLKTTRSLIKLFHDQISKTALEEFNFWQFYYRSLSRLNDQLH 301
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +2
Query: 278 IFRNIVQKSADYDHESVVKIWIGPRLLVFLYDPRDVEVILSSHVYIDKAEEYRF 439
+ ++++ K+ +E+ V+ + +L+ DVE + S +YID E+Y F
Sbjct: 485 VMQSLLSKATSATNENSVRAFWAFMVLL----KSDVETVDSLEMYIDSLEQYSF 534
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 61 QHELYKRRKCSAYKHVFCDQPLLCVTC 141
Q ELY R + S Y HV D + +C
Sbjct: 111 QTELYPRSQISVYLHVLQDDGAVMASC 137
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 420 KLRNTVSSNHGSETVFLSVLVKNGGL 497
K+++ ++S HG TV S+L+ N G+
Sbjct: 55 KVKDYIAS-HGGHTVITSILIANNGI 79
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 197 HTTAALTFASRRTRGLRPAQVTHRR 123
HT AA+ A RG R V HR+
Sbjct: 42 HTAAAVKEAFSENRGFRTCHVCHRK 66
>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 6.7
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = -2
Query: 496 RPPFLTSTDKKTVSEPWFEETV--FLSFIDVNVTTQDDFHVARIVQKD 359
RPPF+T D T W + F+S I NV T H Q+D
Sbjct: 225 RPPFITQCDTATGDNYWAGTYMGDFVSNI-TNVLTNSTGHYCTTQQED 271
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 433 VFLSFIDVNVTTQDDFHVARIVQKDE 356
+F + D+N+ + HV +++QKDE
Sbjct: 31 LFKKYDDINLIKEAYNHVHKLIQKDE 56
>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 723
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Frame = +2
Query: 62 NMSYTNAENVVPTSTFS-----AINLFYVLLVPAV 151
N + +A + PTSTFS +N F L +PAV
Sbjct: 558 NQFFCSAPKLDPTSTFSGVAQRVVNTFTNLFIPAV 592
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 279 MSADPPTNSRAFPSNGSPGG 220
M D NSR FPSN GG
Sbjct: 191 MGYDRRRNSRDFPSNNKDGG 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,972
Number of Sequences: 5004
Number of extensions: 38675
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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