Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0053
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.98 
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         30   1.3  
SB_33020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_8405| Best HMM Match : PAN (HMM E-Value=0.044)                      29   3.0  
SB_58979| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_8320| Best HMM Match : p450 (HMM E-Value=0)                         28   5.3  
SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  

>SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 472 DKKTVSEPWFEETVFLSFIDVNVTTQ 395
           D  T+++PW   T+   F+D+N  TQ
Sbjct: 44  DTYTITQPWISYTITQPFLDINTITQ 69



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 511 DKFTMRPPFLTSTDKKTVSEPWFEETVFLSFIDVNVTTQ 395
           D +T+  P+++ T    ++ PW   T+   F+D+N  TQ
Sbjct: 116 DTYTITQPWISYT----ITHPWISYTISQPFLDINTITQ 150


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +3

Query: 222  LQDFRYSGTPWNSS-VDLLTSSE-T*FRKALTTITNPSLRSG*DLVSSSFCTILATWKSS 395
            L+ + Y+G   N +  DL   S+ +   KAL  IT+       D+ S     I  T  S 
Sbjct: 2015 LRGWTYTGEALNQARADLFAKSKRSNVAKALIMITDGYSNDAVDVPSKKLRDIGVTVLSV 2074

Query: 396  *VVTFTSIKLRNTVSSNHGSETVF 467
             V    SIK  NT++++  SE VF
Sbjct: 2075 GVGKHVSIKQLNTIATDPDSENVF 2098


>SB_33020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 490 PFLTSTDKKTVSEPWFEETVFLSF-IDVNVTTQDDFHVARIVQKDEETRSYPDLNDGF 320
           PFL  TDK   SE + +E   LS     N      F+V     KD +TR  PD ++ F
Sbjct: 255 PFLDITDKVLTSENYADERGLLSIEFHPNYVRNGKFYVYYSTFKDNKTR--PDNDEPF 310


>SB_8405| Best HMM Match : PAN (HMM E-Value=0.044)
          Length = 387

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 162 TPTGECQGGGCMSLLTN*MGLQDFRYSGTPWNSSVDLLT 278
           T  G C GGG   ++      Q F YS   WNS  +  T
Sbjct: 168 TDLGSCGGGGWTLVMKIDGNKQTFSYSSPKWNSMAEYQT 206


>SB_58979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +2

Query: 59  LNMSYTNAENVVPTSTFSAINLFYVLLVPAVILWYAYWRMSRRRL--YELADKLN 217
           + +S+T+   +      +A+ LF   LV  +I+ ++ W++SR R+  YE + K++
Sbjct: 160 VGLSFTSYSTIFGFIGVTAVLLFVFGLVMYIIVQHSLWKLSRPRVNPYENSTKIS 214


>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1207

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = +2

Query: 356 LVFLYDPRDVEVILSSHVYIDKA------EEYRFFKPWLGNGLLISTGQKWRSHRKLIA 514
           +V + DP DV+++L S     K       ++YR  +  +  GL  + G++W  HR +++
Sbjct: 782 VVSISDPDDVQMVLRSESKFPKRSLLPLIDQYRQLRQ-VPPGLAFAVGEEWYKHRTVLS 839


>SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 62  NMSYTNAENVVPTSTFSAINLFYVLLVP--AVILWYAYWRMSRRRLYELADK 211
           N +Y    NV+    +  + ++YVLLVP   + L+   W    ++ Y+  ++
Sbjct: 296 NYTYFKCSNVISQYFWVTLVIYYVLLVPYSVISLYTCCWTKFMKQNYDFKEE 347


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,167,542
Number of Sequences: 59808
Number of extensions: 300003
Number of successful extensions: 764
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)