Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0052
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 0.68
10_01_0295 - 3060398-3060415,3060487-3061011 29 2.7
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962... 29 2.7
03_06_0541 - 34607071-34607353,34608167-34608399,34609093-346092... 29 4.8
12_02_0541 + 20162313-20162374,20162670-20163419,20164627-201648... 28 6.3
09_01_0110 - 1714783-1714803,1718645-1719370 28 6.3
08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983 28 6.3
03_05_0480 + 24740567-24741559 28 6.3
03_05_0308 - 22977542-22978174,22978202-22978387 28 6.3
12_02_0062 - 13084207-13084800 28 8.4
07_03_0614 - 19974200-19975426 28 8.4
04_03_0904 + 20717005-20718087 28 8.4
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 31.5 bits (68), Expect = 0.68
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 502 SPS*KGLEESVDRYNPNNYQSPSSLEHPPVQSHTLIPAPHGTYHNPNVPNYH--SRASTE 675
SPS S +Y P++ SPSS + S T P +Y P+ P+Y SR E
Sbjct: 1802 SPSSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTYSPT-SPSYSQPS-PSYSPTSRVEEE 1859
Query: 676 TREQATYKQPR 708
E+A ++P+
Sbjct: 1860 AHEEAEEEEPK 1870
>10_01_0295 - 3060398-3060415,3060487-3061011
Length = 180
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 559 QSPSSLEHPPVQSHTLIPAPHGT 627
QSPSS PP+ T +P P GT
Sbjct: 6 QSPSSASKPPIPPKTKLPKPPGT 28
>06_03_0138 +
17093196-17093325,17095704-17095804,17096224-17096292,
17096403-17097650,17097763-17097871,17099459-17099655,
17099732-17099842,17099927-17100079
Length = 705
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 129 VPESTYIPTETKFQAQPDPSPQYYYDNNEQPEPVEHQWR 245
V S P+E +F + P PS Q NNE + +W+
Sbjct: 454 VTSSVVSPSEDQFASSPVPSHQQLEQNNEDRHTKKPEWK 492
>03_06_0541 -
34607071-34607353,34608167-34608399,34609093-34609275,
34609357-34609659
Length = 333
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 484 LKGLLRPRVFVFGHSWDPVNSLSKLLSRQERGR 386
L L P+VFV GH W + S + L R +R R
Sbjct: 94 LDALELPQVFVVGHDWGAIVSWNLCLLRPDRVR 126
>12_02_0541 +
20162313-20162374,20162670-20163419,20164627-20164820,
20165001-20165074,20165094-20165114
Length = 366
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 546 PK*LSVAKQSGTPAGTKSHPDPSAS 620
P+ LS A++S P G K PDP A+
Sbjct: 239 PRTLSTARKSTRPPGKKPKPDPEAT 263
>09_01_0110 - 1714783-1714803,1718645-1719370
Length = 248
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +1
Query: 559 QSPSSLEHPPVQSHTLIPAPHGTYHNPNVP 648
QSPSS PP +P P GT H PN P
Sbjct: 5 QSPSSGVKPPNPPRAKLPNPPGTKH-PNPP 33
>08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983
Length = 145
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Frame = +1
Query: 547 PNNYQSPSSLEHPPV---QSHTLIPAPHGTY---HNPNVPNY 654
P Y PS +PP SH + P P G Y H P P Y
Sbjct: 49 PYPYPPPSGAVYPPQGYPSSHGVYPPPQGPYPPPHQPPPPGY 90
>03_05_0480 + 24740567-24741559
Length = 330
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 546 PK*LSVAKQSGTPAGTKSHPDPSAS 620
P+ LS A++S P G K PDP A+
Sbjct: 278 PRTLSTARKSTRPPGKKPKPDPEAT 302
>03_05_0308 - 22977542-22978174,22978202-22978387
Length = 272
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 546 PK*LSVAKQSGTPAGTKSHPDPSAS 620
P+ LS A++S P G K PDP A+
Sbjct: 220 PRTLSTARKSTRPPGKKPKPDPEAT 244
>12_02_0062 - 13084207-13084800
Length = 197
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 546 PK*LSVAKQSGTPAGTKSHPDPSASRNLSQSERAQLPFSC 665
P+ LS A++S P G + PDP A + SE L F+C
Sbjct: 145 PRTLSTARKSTRPPGKRPKPDPEA----TTSEPWGLRFAC 180
>07_03_0614 - 19974200-19975426
Length = 408
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 546 PK*LSVAKQSGTPAGTKSHPDPSASRNLSQSERAQLPFSC 665
P+ LS A++S P G + PDP A + SE L F+C
Sbjct: 356 PRTLSTARKSTRPPGKRPKPDPEA----TTSEPWGLRFAC 391
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 132 PESTYIPTETKFQAQPDPSPQYYYDNNEQPEPVEH 236
P TY P ++ QP P+P Y +P P +
Sbjct: 238 PPPTYKPAPPTYKPQPKPNPPPTYKPQPKPTPTPY 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,410,646
Number of Sequences: 37544
Number of extensions: 370666
Number of successful extensions: 1279
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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