Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0052
(709 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 32 0.52
SB_56012| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_25802| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_10699| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_225| Best HMM Match : DSPc (HMM E-Value=8.6e-05) 29 3.7
SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20) 29 3.7
SB_37978| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.9
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_59337| Best HMM Match : Chorion_3 (HMM E-Value=2.5) 28 6.5
SB_57906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_46614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13) 28 8.5
>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 406
Score = 31.9 bits (69), Expect = 0.52
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 574 LEHPPVQSHTLIPAPHGTYHNPNVPNYHSRAS 669
++HP ++ P PH TY +P+ P+ H +AS
Sbjct: 121 IQHPSYPTYKHPPFPHPTYKHPSYPSPHIQAS 152
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 541 YNPNNYQSPS-SLEHPPVQSHTLIP-APHGTYHNPNVPNYH 657
Y +Y SP P+ HT IP PH TY +P+ P Y+
Sbjct: 139 YKHPSYPSPHIQASLLPLIPHTSIPPTPHPTYKHPSYPTYN 179
>SB_56012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 354
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 541 YNPNNYQSPSSLEHPPVQSHTLIPAPHGTYHNPNVPNYHSRASTETREQATYKQPR 708
+N +YQSPS +SH++ + + + NP S S E RE A PR
Sbjct: 209 FNAEDYQSPSK-SSTKSRSHSIASSQNNNHTNPKPGTNISPGSPERREFAQVTGPR 263
>SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +1
Query: 538 RYNPNNYQSPSSLEHPPVQSHTLIPAPHGTYHN---PNVPNYHSRASTETREQATYKQP 705
RYN N + ++ + P ++T I PH H+ P P+ ++ +T T++ Y P
Sbjct: 3 RYNTNKSITKTTTQPSPNNTYTTITKPHRHNHHQTTPTQPSSNNTNATITQQHQHYHHP 61
>SB_25802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Frame = +3
Query: 24 TAPNQSFVKPVNAAEQSKQSGRKTYYSEYERRYISVPEST-----YIPTETKFQAQPDPS 188
T S+V + Y S Y + + E+T Y P+ T
Sbjct: 55 TTATPSYVTTAPVYSSETTTAASAYPSSYTAAPVYLSETTTSASAYPPSYTAASVSTSTE 114
Query: 189 PQYYYDNNEQPE 224
P YYYD ++ PE
Sbjct: 115 PYYYYDPHQAPE 126
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Frame = +3
Query: 60 AAEQSKQSGRKTYYSEYERRYISVPEST-----YIPTETKFQAQPDPSPQYYYDNNEQPE 224
+A S + Y S Y + + E+T Y P+ T P YYYD ++ PE
Sbjct: 229 SAYPSSYTAASAYPSSYTAASVYLSETTTAASAYPPSYTAASVSTSTEPYYYYDPHQAPE 288
>SB_10699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 541 YNPNNYQSPSSLEHPPVQSHTLIPAPHGTYH 633
+ PN Y S S L P T+IP GTYH
Sbjct: 65 FRPNKYDS-SGLAWKPESFRTVIPLAPGTYH 94
>SB_225| Best HMM Match : DSPc (HMM E-Value=8.6e-05)
Length = 881
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 496 KMSPS*KGLEESVDRYNPNNYQSPSSLEHPPVQSHTLIPAPHGTY 630
+ P+ L S +RYN + Y P + TL+P H TY
Sbjct: 734 RSGPAKHALSNSQNRYNSSVYTVPLLPNEASEHTPTLLPCEHSTY 778
>SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)
Length = 681
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 553 NYQSPSSLEHPPVQSHTLIPAPHGTYHNPNVP--NYHSRASTETREQATYKQPR 708
NY +PS E VQ L P+ Y++ N P N +SR T+T + +Q R
Sbjct: 44 NYATPSFHELHKVQKQVLQPS--SVYNSDNQPTANQNSREGTDTEDDRAGQQMR 95
>SB_37978| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 487
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 352 HTHQRPLGVKLCGRALGVKGALKGNS 429
HT ++P LCGRA +G+L+ +S
Sbjct: 341 HTGEKPYKCHLCGRAFSQQGSLQAHS 366
>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1267
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = +1
Query: 550 NNYQSPSSLEHPPVQSHTLIP------APHGTYHNPNVPNYHSRASTETREQAT 693
N + + S L PPV S L+P P +YH P +P H S+ T Q++
Sbjct: 354 NYHPAISYLHRPPVPSSHLLPFIAHQYHPAISYHRPQLPPSHLSPSSTTTIQSS 407
>SB_59337| Best HMM Match : Chorion_3 (HMM E-Value=2.5)
Length = 480
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -2
Query: 120 SVSRIHCNKFFGQTVWIVPRRLLVSRK 40
SV R H ++ GQ VW++P L+++++
Sbjct: 331 SVQRYHVSRAGGQGVWLMPSDLVINKQ 357
>SB_57906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 174 QPDPSPQYYYDNNEQPEPVEHQ 239
QP+ PQY Y+N+E P+ Q
Sbjct: 27 QPEMFPQYQYENHELPQSTSQQ 48
>SB_46614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 547 PNNYQSPSSLEHPPVQSHTLIPAPHGTYHNPNVPNYHSRASTE 675
P N QS ++ + PP++SH T P + ++ SRA+ +
Sbjct: 261 PGNRQSRATNQEPPIKSH----QSRATSQEPPIKSHQSRATNQ 299
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +3
Query: 51 PVNAAEQSKQSGRKTYYSEYERRYISVPESTYIPTETKFQAQPDPSPQYYYDNNEQPEPV 230
PV +E S SG + +R+IS+ K + +P +P Y D P+
Sbjct: 2896 PVILSESSDSSGDEQI--SRTKRFISILAPNGEEKTPKSKKRPKGAPFYASDGPMHSTPM 2953
Query: 231 EHQW 242
HQW
Sbjct: 2954 VHQW 2957
>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
Length = 334
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 24 TAPNQSFVKPVNAAEQSKQSGRKTYYSEYERRYISVPESTYIPTETKFQAQPDPSPQYYY 203
T P+ + KPV A + K+ R+ SE+ER + I + ++ + D + +
Sbjct: 212 TPPDVNKTKPVEAWLERKEH-REDSLSEHEREEVKNKHKPMIKADATYKVKSDQARPNHE 270
Query: 204 DNNEQPEPV-EHQWRKELRE 260
PE V + + R+ R+
Sbjct: 271 RKQRSPERVKKRETRRRTRK 290
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,796,376
Number of Sequences: 59808
Number of extensions: 415451
Number of successful extensions: 1759
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1743
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -