Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0052
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     32   0.006
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.8  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   8.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.7  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 31.9 bits (69), Expect = 0.006
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +1

Query: 541 YNPNNYQSPSSLEHPPVQSHTLIPAPHGTYHNPNVPNYHSRASTETREQAT 693
           YNP   QS  S ++P   SH L      TY     P  H     + +EQ T
Sbjct: 429 YNPALIQSQPSPQYPSTSSHILQQPSIRTYTQQQFPYVHDTLQIQPQEQLT 479


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 352 HTHQRPLGVKLCGRALGVKGALK 420
           HT ++P    +CG++ G    LK
Sbjct: 226 HTGEKPYTCDICGKSFGYNHVLK 248


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +3

Query: 108 YERRYISVPESTYIPTETKFQAQPDPSPQYYYDNNEQPEPVEHQW 242
           Y    I + +  +   ET   A  +  P  YY  +  PE   +QW
Sbjct: 384 YNGDEIGMEDRWFTYQETVDPAGCNAGPAKYYLKSRDPERTPYQW 428


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 355 THQRPLGVKLCGRALGVKGALKGNSLDPKSGQK 453
           TH  P    LCG+A      L+G+ +   +G+K
Sbjct: 38  THTLPCKCHLCGKAFSRPWLLQGH-IRTHTGEK 69


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 526 ESVDRYNPNNYQSPSSLEHPPVQSHTLI 609
           E ++   P  YQ  + LE  P +S TL+
Sbjct: 531 EFIEFSKPFKYQGITILEKKPSRSSTLV 558


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,063
Number of Sequences: 438
Number of extensions: 4308
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)