Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0051
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.2  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   6.8  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   6.8  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   6.8  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   6.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.0  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 419 HVIMFSPELNLRKKFT 466
           ++I+F P+ N+R+K T
Sbjct: 761 YIILFQPDKNIRRKVT 776


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 419 HVIMFSPELNLRKKFT 466
           ++I+F P+ N+R+K T
Sbjct: 851 YIILFQPDKNIRRKVT 866


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +1

Query: 256 NKNKLNQEKSKEAKRASESPSKKKTPAPVYMELTYVPHHGNSY 384
           N  +  +E SKE  R      + + P  +   L    H+ N+Y
Sbjct: 276 NSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNNNY 318


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +1

Query: 256 NKNKLNQEKSKEAKRASESPSKKKTPAPVYMELTYVPHHGNSY 384
           N  +  +E SKE  R      + + P  +   L    H+ N+Y
Sbjct: 287 NSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNNNY 329


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +1

Query: 256 NKNKLNQEKSKEAKRASESPSKKKTPAPVYMELTYVPHHGNSY 384
           N  +  +E SKE  R      + + P  +   L    H+ N+Y
Sbjct: 287 NSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNNNY 329


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +1

Query: 256 NKNKLNQEKSKEAKRASESPSKKKTPAPVYMELTYVPHHGNSY 384
           N  +  +E SKE  R      + + P  +   L    H+ N+Y
Sbjct: 276 NSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNNNY 318


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 277 EKSKEAKRASESPSKKKTPAPVYMELTYVPHH 372
           E+ K+  + S SPS+ ++   +  + T   HH
Sbjct: 538 EEEKKKTKQSLSPSENQSKMEILPKTTQRQHH 569


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 96  LFAVTRRCFSGFFSLGFNVFQRNAFSS 16
           LFA T  C +      FN+  RN  S+
Sbjct: 303 LFACTNSCMNPIVYGAFNIRDRNKTSA 329


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +1

Query: 163  KPLGLPSPIMP--PNQHDSKSTPKKQNPSSTILNKNKLNQE 279
            +PL +     P  P+ + S + PK + P    +   K N+E
Sbjct: 1051 RPLSMEKGTRPMIPDDNTSLALPKNEGPFRLNVETAKTNEE 1091


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.132    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,784
Number of Sequences: 438
Number of extensions: 4027
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)