Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0050
(736 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical pr... 97 1e-20
Z54236-2|CAE46661.1| 313|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z54236-1|CAA90979.2| 312|Caenorhabditis elegans Hypothetical pr... 50 2e-06
AF321546-1|AAG42102.1| 312|Caenorhabditis elegans suppressor of... 50 2e-06
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 29 3.4
Z81123-2|CAB03365.1| 734|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z46829-1|CAA86862.1| 375|Caenorhabditis elegans Hypothetical pr... 29 4.5
>U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical
protein D2096.8 protein.
Length = 316
Score = 97.1 bits (231), Expect = 1e-20
Identities = 57/170 (33%), Positives = 82/170 (48%)
Frame = +2
Query: 227 EAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGT 406
+ + +LP NV++R+ AL+ LQ + + IE+ FY VH R IV G
Sbjct: 17 DMIQALPLNVKQRVCALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGE 76
Query: 407 YEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNI 586
EP ++ P + E ++LA KA E DP+ KGI DFW
Sbjct: 77 VEPTKEQIDTPILEGLEGDQLAELY--------------KAAEA--DPSAKGIKDFWLTA 120
Query: 587 FRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 736
R +++E ++EHD PIL L D+ +DP F +EF+FA N YF N
Sbjct: 121 LRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGFKIEFHFATNPYFKN 170
>Z54236-2|CAE46661.1| 313|Caenorhabditis elegans Hypothetical
protein C27B7.1b protein.
Length = 313
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 563 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTN 736
I +FW F N +LS + E E +L L+D++VQ ED S F + F PNEYFTN
Sbjct: 77 IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTN 135
>Z54236-1|CAA90979.2| 312|Caenorhabditis elegans Hypothetical
protein C27B7.1a protein.
Length = 312
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 563 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTN 736
I +FW F N +LS + E E +L L+D++VQ ED S F + F PNEYFTN
Sbjct: 77 IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTN 135
>AF321546-1|AAG42102.1| 312|Caenorhabditis elegans suppressor of
presenilin 2 protein.
Length = 312
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 563 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTN 736
I +FW F N +LS + E E +L L+D++VQ ED S F + F PNEYFTN
Sbjct: 77 IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTN 135
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 340 ECMYFTVKLGLNVDKLLLKSSQGADSPTNI 251
EC++ + K GLNVDK+L +PT I
Sbjct: 188 ECLHISAKSGLNVDKVLEAIIDRVPAPTAI 217
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +2
Query: 455 EEEELARAVQNAAI---TEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQE 625
+EE+ QNA + T E++ + + N + +P IF V + + +
Sbjct: 1101 QEEQRVCYAQNAVVDMKTILEKEFRVNRVNTVLCLNDRPLPQL--TIFEQVRLEKDRLPA 1158
Query: 626 HDEPILKCLQDIKVQMHEDPIS 691
+ P+L L ++V H+DP S
Sbjct: 1159 NSYPVLSKLSTVRVSQHDDPTS 1180
>Z81123-2|CAB03365.1| 734|Caenorhabditis elegans Hypothetical
protein T14D7.2 protein.
Length = 734
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -1
Query: 463 FFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFI---FAFECMYFTVKLGLNVDKL 293
+ F +I P V T++++ F + + LFI V+ I FA C + LN+++L
Sbjct: 648 YLFHMI-PVVLTYMLVPFPIYFNTQIPLFIHCFVQLLITYFFAIICTMVSELPALNIERL 706
Query: 292 LLKS 281
LL S
Sbjct: 707 LLAS 710
>Z46829-1|CAA86862.1| 375|Caenorhabditis elegans Hypothetical
protein T14B1.1 protein.
Length = 375
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 434 NPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMD 547
+P RD+ EE LA+ ++ A GE+++ + EP D
Sbjct: 6 DPGRDEEVEEPLAKKIRVVAQEAGEDEESEMEKEPNAD 43
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,756,224
Number of Sequences: 27780
Number of extensions: 342535
Number of successful extensions: 1107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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