Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0047
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...   185   5e-48
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...   166   3e-42
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    29   0.48 
SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit...    28   1.5  
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   2.0  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    27   2.6  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    26   4.5  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   4.5  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    26   6.0  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   7.9  

>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score =  185 bits (451), Expect = 5e-48
 Identities = 100/209 (47%), Positives = 131/209 (62%), Gaps = 9/209 (4%)
 Frame = +1

Query: 94  GSAIAKIVGRNA-ASLSNFEDRVTMWVYEEIIEGK----KLTEIINETHENVKYLPGHKL 258
           G+AIAKI G NA A   +F  +V MWV+EE IE K    KLTE+ NE HENVKYLPG + 
Sbjct: 34  GTAIAKICGENARAHGHHFRSKVRMWVFEEEIEYKGEKRKLTEVFNEAHENVKYLPGIEC 93

Query: 259 PSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDIAEGGG 438
           P NV+AVPDV E A+ AD+L+FVVPHQF+  +C  ++G I+P A  +S IKG  +++  G
Sbjct: 94  PPNVIAVPDVREVARRADILVFVVPHQFIERVCDQMVGLIRPGAVGISCIKGVAVSK-EG 152

Query: 439 IDLISHIITRCLKIPCAVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRD----IIQTD 606
           + L S +I+  L I C VL GAN+A+EVA E+FCETTIG        + R+    +    
Sbjct: 153 VRLYSEVISEKLGIYCGVLSGANVANEVAREQFCETTIGFNPPNEVDIPREQIAAVFDRP 212

Query: 607 YFRXXXXXXXXXXXICGALKNIVAVGAGF 693
           YF            + GALKN+VA+  GF
Sbjct: 213 YFSVVSVDDVAGVALGGALKNVVAMAVGF 241


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score =  166 bits (403), Expect = 3e-42
 Identities = 100/212 (47%), Positives = 129/212 (60%), Gaps = 11/212 (5%)
 Frame = +1

Query: 94  GSAIAKIVGRNAASLSN-FEDRVTMWVYEEII--EGKK--LTEIINETHENVKYLPGHKL 258
           G+AIAKI G NA +  + F  +V MW+YEE I  EGK+  LTE+ N THENVKYL G K 
Sbjct: 36  GTAIAKICGENAKAHPDIFHPQVHMWMYEEKIQHEGKECNLTEVFNTTHENVKYLKGIKC 95

Query: 259 PSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDIAEGGG 438
           PSNV A PD+ +    +D+L++V+PHQFV  IC+ L G +K  A A+S IKG  + +   
Sbjct: 96  PSNVFANPDIRDVGSRSDILVWVLPHQFVVRICNQLKGCLKKDAVAISCIKGVSVTK-DR 154

Query: 439 IDLISHIITRCLKIPCAVLMGANIASEVAEEKFCETTIG-CRDVMLAP-----LMRDIIQ 600
           + L S II     + C VL GANIASEVA+EKFCETTIG   +  + P      ++ +  
Sbjct: 155 VRLFSDIIEENTGMYCGVLSGANIASEVAQEKFCETTIGYLPNSSVNPRYTPKTIQALFN 214

Query: 601 TDYFRXXXXXXXXXXXICGALKNIVAVGAGFV 696
             YFR           + GALKNIVAV AG +
Sbjct: 215 RPYFRVNIVEDVPGVALGGALKNIVAVAAGII 246


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +1

Query: 439 IDLISHIITRCLKIPCAVLMGANIASEVAEEKFCET----TIGCRDVMLAPLMRDII 597
           +D+ + ++T C+  P +VL+    AS +A  K C       IG R   LA  +R  I
Sbjct: 152 LDIAAEVVTACINAPDSVLVDILAASIIAGAKACMREVIGRIGLRSECLASALRRAI 208


>SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit
           7a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -3

Query: 492 YSTGNF*ASCNNM*YKIDATTFGYIKSLNQ--RQSS---CSWLYFSKQSRADSSD 343
           YS   F   C+N+ +++DA T    KS  +  R SS     ++ F K+ R D +D
Sbjct: 148 YSLDRFIERCSNILFQLDAGTPSVSKSFKRASRMSSSDGIDYMVFDKRPRPDDTD 202


>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 75

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 242 RYLTFS*VSLIISVNFFPSIISSYTHIVTLSSK 144
           RY TFS + L+   N FP  ISS+  ++T   K
Sbjct: 26  RYATFSILKLV-EYNCFPGFISSFHSLLTYRKK 57


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 337 QFVRTICSTLLGKIKPTAAALSLIKGFDIAE 429
           + +R IC T+ G ++ +   + L KGF++ E
Sbjct: 315 ELIRFICLTINGNLQISGQTVDLEKGFEVIE 345


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 206 SVNFFPSIISSYTHIVTLSSKFDR 135
           +++  PSIISSYT +  L++K  R
Sbjct: 206 TISALPSIISSYTSLAPLNTKLYR 229


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 169  VYEEIIEGKKLTEIINETHENVKYL 243
            + ++ +  +K  E++NETHE  K+L
Sbjct: 969  IQQKYLASEKTLEMMNETHEQFKHL 993


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
 Frame = +1

Query: 238 YLPGHKLPSNVVAVPDVVEA-AKDADLLIFVVPH----QFVR---TICSTLLGKIKPTAA 393
           Y+PG +    V AV D VEA  K  D ++++ P     Q+     T+ S +  KI    A
Sbjct: 59  YIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPFGAYAQYTNVPTTLVSKVSEKIPLKIA 118

Query: 394 ALSLIKG 414
           + +L++G
Sbjct: 119 SAALLQG 125


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 602 VCMISRINGASITSRQPMVVSQNFSSATSDAILAPI 495
           V   S++   S TS+   +VS+N  SATS +I  PI
Sbjct: 175 VSSASKVASISNTSKPNPIVSENPISATSVSIEIPI 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,212
Number of Sequences: 5004
Number of extensions: 53236
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)