Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0047
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562... 131 5e-38
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726... 64 1e-10
05_05_0339 + 24213179-24213821,24214402-24214623,24215035-242152... 42 5e-04
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469... 42 5e-04
01_07_0128 + 41238510-41239146,41239420-41239461,41240076-412402... 34 0.12
08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675 32 0.50
03_02_0621 - 9923163-9923245,9924163-9924338,9924437-9924495,992... 32 0.50
02_05_0192 + 26602247-26602617,26602701-26603016 31 1.2
01_01_0896 + 7060431-7061390,7063562-7064191 31 1.2
12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404 29 2.7
12_01_0515 + 4081373-4081622,4081725-4081867,4082061-4082219,408... 29 3.5
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76... 29 3.5
>01_07_0341 -
42855667-42855849,42855933-42855981,42856165-42856219,
42856290-42856410,42856495-42856532,42856612-42856675,
42856778-42856885,42857066-42857187,42857544-42857616,
42857700-42857776,42858521-42858632
Length = 333
Score = 131 bits (317), Expect(2) = 5e-38
Identities = 60/112 (53%), Positives = 81/112 (72%), Gaps = 1/112 (0%)
Frame = +1
Query: 94 GSAIAKIVGRNAASLSNFEDRVTMWVYEEIIE-GKKLTEIINETHENVKYLPGHKLPSNV 270
GS ++++ N A L +F D V MWV+EEI+ GKKL+E IN+ +EN KYLPG KL +NV
Sbjct: 19 GSVASRLIASNTAKLPSFHDEVRMWVFEEILPTGKKLSESINQANENCKYLPGIKLGANV 78
Query: 271 VAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDIA 426
+A PD+ A KDA++L+FV PHQFV IC L+GK++P +SLIKG +IA
Sbjct: 79 IADPDLENAVKDANMLVFVTPHQFVEGICKKLVGKLRPGTEGISLIKGMEIA 130
Score = 44.4 bits (100), Expect(2) = 5e-38
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 517 EVAEEKFCETTIGCR-DVMLAPLMRDIIQTDYFRXXXXXXXXXXXICGALKNIVAVGAGF 693
E+A EKF E TIG + D +A + T YF +CG LKN+VA+ AG
Sbjct: 128 EIAVEKFSEATIGYKKDKEVATRWAKLFTTPYFLVSVVEDIEGVELCGTLKNVVAIAAGL 187
Query: 694 V 696
V
Sbjct: 188 V 188
>07_01_0874 -
7261191-7261274,7262291-7262440,7262769-7262916,
7263136-7263259,7263452-7263653,7263743-7263848,
7263979-7264442
Length = 425
Score = 64.1 bits (149), Expect = 1e-10
Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 15/177 (8%)
Frame = +1
Query: 211 INETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTA 390
IN +H N KYL H+LP N+ A +A AD VP QF + + + P
Sbjct: 148 INHSHINCKYLRDHRLPENITATTSASDALAGADFCFHAVPVQFSSSFLEGISTHVDPKL 207
Query: 391 AALSLIKGFDIAEGGGIDLISHIITRCL---KIPCAVLMGANIASE------------VA 525
+SL KG ++ + +S II + L + P VL G + A E V
Sbjct: 208 PFISLSKGLEL---NTLRTMSQIIPQALGNPRQPFIVLSGPSFAIELMNKLPTGRNLIVI 264
Query: 526 EEKFCETTIGCRDVMLAPLMRDIIQTDYFRXXXXXXXXXXXICGALKNIVAVGAGFV 696
+ + +D LA ++ ++ + R I GALKN++A+ AG V
Sbjct: 265 KLYMAAMVVASKDKKLAAAVQQLLASPNLRISTSNDVTGVEIAGALKNVLAIAAGIV 321
>05_05_0339 +
24213179-24213821,24214402-24214623,24215035-24215282,
24215385-24215524,24215579-24215753
Length = 475
Score = 41.9 bits (94), Expect = 5e-04
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Frame = +1
Query: 277 VPDVVEAAKDADLLIFVVPHQFVRTICSTL----LGKIKPTAAALSLIKGFDIAEGGGID 444
V ++ EA DAD++I +P R + + +I+P +SL KG + +
Sbjct: 145 VTNLQEAVWDADIVINGLPSTETREVFGEIGRYWKERIRPPVI-ISLAKGIEASIDPVPR 203
Query: 445 LIS--HIITRCLKIPCAVLM---GANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDY 609
+I+ +I+ +P ++ G NIASE+ +++ I D PL + ++ +
Sbjct: 204 IITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAK-FLRQPH 262
Query: 610 FRXXXXXXXXXXXICGALKNIVAVGAGFV 696
F + G LKNI A+GAG V
Sbjct: 263 FIVWDNSDLITHEVMGGLKNIYAIGAGMV 291
>01_06_1031 -
33945681-33945822,33946502-33946641,33946748-33946995,
33947355-33947576,33948188-33948839
Length = 467
Score = 41.9 bits (94), Expect = 5e-04
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 8/148 (5%)
Frame = +1
Query: 277 VPDVVEAAKDADLLIFVVPHQFVRTICSTL--LGKIKPTAAA-LSLIKGFDIAEGGGIDL 447
V ++ EA DAD++I +P R + + K + TA LSL KG + + +
Sbjct: 148 VTNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAKGIEASLDPLPRI 207
Query: 448 IS--HIITRCLKIPCAVLM---GANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDYF 612
I+ +I+ +P ++ G NIASE+ +++ I D PL + ++ +F
Sbjct: 208 ITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAK-FLRQPHF 266
Query: 613 RXXXXXXXXXXXICGALKNIVAVGAGFV 696
+ G LKN+ A+GAG V
Sbjct: 267 IVWDNSDLITHEVMGGLKNVYAIGAGMV 294
>01_07_0128 +
41238510-41239146,41239420-41239461,41240076-41240297,
41240909-41241156,41241296-41241435,41241904-41242027
Length = 470
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +1
Query: 493 LMGANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDYFRXXXXXXXXXXXICGALKNI 672
L G NIASE+ +++ I + PL + ++ +F + G LKN+
Sbjct: 237 LGGPNIASEIYNKEYANARICGSNKWRKPLAK-FLRQPHFIVWDNSDLVTHEVMGGLKNV 295
Query: 673 VAVGAGFV 696
A+GAG V
Sbjct: 296 YAIGAGMV 303
>08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675
Length = 264
Score = 31.9 bits (69), Expect = 0.50
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -2
Query: 559 DNQWSFRRIFPQQPPMQYWLPL 494
D++W R+F +QPP+++WL +
Sbjct: 93 DSEWVICRVFKKQPPIEHWLEM 114
>03_02_0621 -
9923163-9923245,9924163-9924338,9924437-9924495,
9924952-9924984,9925060-9925185
Length = 158
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 61 HYIPIYNIFYRGSAIAKIVG-RNAASLSNF 147
H P + +FY G +AK G RN SL NF
Sbjct: 113 HSYPTFKVFYEGEEVAKYKGPRNVESLKNF 142
>02_05_0192 + 26602247-26602617,26602701-26603016
Length = 228
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 515 RRLLRKNSAKRPLVVGT*CWL--R*CGI-SYRQTTSGSWWWTMRTQSKYVE 658
RRL + R G CW R CG S+R+ +WWW Q ++ E
Sbjct: 46 RRLSAGSGCGRWWSAGDACWRQRRRCGRGSWRRRLLAAWWWRATAQRRFAE 96
>01_01_0896 + 7060431-7061390,7063562-7064191
Length = 529
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 577 EPALRPDNQWSFRRIFPQQPPMQYWLPLIQHREFLGIL 464
+PA R D RR P PP + LPL+ H LG L
Sbjct: 29 KPARRDDGDGGMRRRLPPSPP--WGLPLLGHLHLLGAL 64
>12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404
Length = 335
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 445 LISHIITRCLKIPCAVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQ 600
++SH I + L PCA + A I E+ + C RDV + M I++
Sbjct: 14 MLSHHIQKDLTKPCAKKVTAVIMDEIGDRNLCALIDESRDVSIKEQMGVILR 65
>12_01_0515 +
4081373-4081622,4081725-4081867,4082061-4082219,
4082339-4082518,4082616-4082845,4082959-4083099,
4083366-4083420
Length = 385
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 461 IICDIRSMPPPSAISNPLIKDRAAAVGFIFPSKV 360
++ ++ +PPP + P++ +RA G +FP V
Sbjct: 67 VVALLKPLPPPKTVRYPVLFERAWGFGRLFPCDV 100
>03_01_0096 +
763850-764027,764873-765189,765262-765433,765513-765586,
765658-765835,765917-766026,766122-766221,766305-766391,
766505-766681,766847-767120,767201-767362,767450-767665,
767744-767781,768044-768102,768214-768339,768415-768540,
768642-768695,768789-768851,768924-768986,769079-769141,
769232-769732
Length = 1045
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +1
Query: 103 IAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVK 237
++K++G ++ ED + + YEE+ + KKL I+ ET N++
Sbjct: 366 LSKMIGAVQTLVAQCED-LKLKYYEEMAKRKKLHNIVEETKGNIR 409
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,014,046
Number of Sequences: 37544
Number of extensions: 346185
Number of successful extensions: 940
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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