Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0047
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)             117   1e-26
SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)             110   9e-25
SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_6904| Best HMM Match : NifT (HMM E-Value=8.7)                       29   3.6  
SB_38574| Best HMM Match : WW (HMM E-Value=4.9)                        28   8.4  
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)
          Length = 358

 Score =  117 bits (281), Expect = 1e-26
 Identities = 72/156 (46%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
 Frame = +1

Query: 94  GSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGKKLTEIINETHENVKYLPGHKLPSNV 270
           GS IA+IVG+N    ++ F + V M+ YEE+++G KLTEIIN  H NVKYLP   +P N+
Sbjct: 18  GSVIARIVGQNVKEHNDVFFEGVEMYTYEELVDGVKLTEIINTKHMNVKYLPDFLIPENI 77

Query: 271 VAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDIAEGGGIDLI 450
            A PDVVE  KDAD+L+FVVPHQ                        G D  +  G+ L+
Sbjct: 78  HANPDVVECVKDADILVFVVPHQ------------------------GLDHTK-TGLTLV 112

Query: 451 SHIITRCLKIP-CAVLMGANIASEVAEEKFCETTIG 555
           S++I   L +P  +VLMGAN+A EVA E F E TIG
Sbjct: 113 SNVIKEALDLPEVSVLMGANLAKEVARELFGEATIG 148



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 21/51 (41%), Positives = 27/51 (52%)
 Frame = +1

Query: 544 TTIGCRDVMLAPLMRDIIQTDYFRXXXXXXXXXXXICGALKNIVAVGAGFV 696
           T  GCR     PL++ +  T YF+           +CGALKN VA+GAG V
Sbjct: 205 TVKGCRVKEDGPLLKQLFHTHYFKINVVEDADTVELCGALKNAVAIGAGIV 255


>SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score =  110 bits (265), Expect = 9e-25
 Identities = 71/193 (36%), Positives = 104/193 (53%), Gaps = 2/193 (1%)
 Frame = +1

Query: 94  GSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGKKLTEIINETHENVKYLPGHKLPSNV 270
           G+AIA+I+G N     + F ++V M+VY+ +I G+KL+EIIN  HENVK LPG K+P NV
Sbjct: 239 GTAIARIIGDNVRKKPHLFHNKVQMYVYDSLINGRKLSEIINTEHENVKDLPGFKIPPNV 298

Query: 271 VAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDIAEGGGIDLI 450
                                  F+ ++C  +   IKP   A+SLIKG D  + G + L+
Sbjct: 299 -----------------------FLDSVCQKIKSSIKPDVLAISLIKGLDHRKKG-LHLV 334

Query: 451 SHIITRCLKIP-CAVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDYFRXXXX 627
           S+ I   L +   +V+MGAN+A EVA+  F ETTIG R      + ++++   YF+    
Sbjct: 335 SNQIKESLGLQHVSVMMGANLADEVAKGFFSETTIGSRLEEHGYIFKELLNQPYFKVNVV 394

Query: 628 XXXXXXXICGALK 666
                   CGA+K
Sbjct: 395 KDVETVEFCGAVK 407


>SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 448 ISHIITRCLKIPCAVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTD 606
           I ++++R +K     L G N     A+E FC+ T+   D++      D+I TD
Sbjct: 50  IENLVSRTIKSGFKALYGKNSVG-AAQEMFCKATLDATDIIDPMKKSDLIITD 101


>SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 23 HEARIFHCGHYLVIIYLFTIFFT 91
          H  R +HC HY++II +  +  T
Sbjct: 28 HHRRHYHCHHYIIIIIIIVVVIT 50


>SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 556 NQWSFRRIFPQQPPMQYWLPLIQHREFLGIL 464
           NQ  F  + P   P +YW P+I  R F  +L
Sbjct: 408 NQRPFTLVVPDLQPRKYWWPIINSRAFETLL 438


>SB_6904| Best HMM Match : NifT (HMM E-Value=8.7)
          Length = 408

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 556 NQWSFRRIFPQQPPMQYWLPLIQHREFLGIL 464
           NQ  F  + P   P +YW P+I  R F  +L
Sbjct: 302 NQRPFTIVIPNLQPRRYWWPIINSRAFETLL 332


>SB_38574| Best HMM Match : WW (HMM E-Value=4.9)
          Length = 256

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 334 HQFVRTICSTLLGKIKPTAAALSLIKGFDIAEGGGIDLIS 453
           H+     C   + +IKP      +IKGF I    G +L S
Sbjct: 191 HERRNIACQRFVSRIKPENPLFPIIKGFHITHDSGYNLRS 230


>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +1

Query: 1   PPGCRNSARGKN 36
           PPGCRNS  GKN
Sbjct: 94  PPGCRNSIAGKN 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,345,191
Number of Sequences: 59808
Number of extensions: 396070
Number of successful extensions: 1140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)