Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0046
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53181-6|AAA93486.1| 224|Caenorhabditis elegans Hypothetical pr... 187 6e-48
Z49908-1|CAA90093.1| 816|Caenorhabditis elegans Hypothetical pr... 32 0.46
DQ342049-1|ABC69941.1| 830|Caenorhabditis elegans STIP protein. 32 0.46
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 29 4.3
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p... 29 4.3
U37548-4|AAA79200.2| 373|Caenorhabditis elegans Hypothetical pr... 28 7.4
U41556-3|AAM51519.1| 378|Caenorhabditis elegans Cysteine protea... 27 9.8
U41556-2|ABS19475.1| 369|Caenorhabditis elegans Cysteine protea... 27 9.8
U41556-1|AAK39189.1| 379|Caenorhabditis elegans Cysteine protea... 27 9.8
L39939-1|AAA98789.1| 379|Caenorhabditis elegans cathepsin B-lik... 27 9.8
L39894-1|AAA98787.1| 379|Caenorhabditis elegans cathepsin B-lik... 27 9.8
>U53181-6|AAA93486.1| 224|Caenorhabditis elegans Hypothetical
protein F36D4.2 protein.
Length = 224
Score = 187 bits (456), Expect = 6e-48
Identities = 86/201 (42%), Positives = 137/201 (68%), Gaps = 4/201 (1%)
Frame = +1
Query: 109 IYGIYIVSKSGGLIYNYDHNIPRVETEKTFGFPLDIKLQYENKKVVVAFGQRDGINVGHV 288
I ++I++++G LIY+++ E EKT+ +P+D+ L+ ++K VV FG++DGI + +
Sbjct: 5 IQHLFIINRAGSLIYSWEARTETPEVEKTYEWPIDVHLEEVDQKAVVVFGEKDGIKLRYY 64
Query: 289 LLSVNGSPVTGRTTE---DNRDVFDIIEAKENYPLSLKFGRVRATTNEKIVLASMFYPLF 459
+ SVNG V+G + +V + ++ +++YP+++KF +TNEKI+L+SMF+ LF
Sbjct: 65 VKSVNGETVSGTRLQLGAQQVNVLEYLQEEDHYPVTVKFAAPTVSTNEKIILSSMFHSLF 124
Query: 460 ALASQLSPIPKSSGIESLTADTFKLSCFQTLTGVKFIIVTDTNMQ-GTDVVLKRIYELYS 636
+A QLSP KSSG+E L FKL C Q+ TGVKF+++T D +L ++YELY+
Sbjct: 125 TIAVQLSPCQKSSGVEVLETTQFKLFCLQSRTGVKFVVITSAASNIAADSLLSKMYELYT 184
Query: 637 DYALKNPFYSLEMPIRCELFD 699
D+ALKNPFYS++MPIR + FD
Sbjct: 185 DFALKNPFYSIDMPIRAQKFD 205
>Z49908-1|CAA90093.1| 816|Caenorhabditis elegans Hypothetical
protein C07E3.1a protein.
Length = 816
Score = 31.9 bits (69), Expect = 0.46
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 2/152 (1%)
Frame = +1
Query: 223 QYENKKVVVAFGQRDGINVGHVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYPL--SLKF 396
QY N KV+ G++ I G+ S+ ++ R VFD+ E N L L
Sbjct: 264 QYSNIKVIDMTGKQQKIYSGYDSFSMKTRSEYDTVDDEERTVFDVPELIHNLNLLVDLTE 323
Query: 397 GRVRATTNEKIVLASMFYPLFALASQLSPIPKSSGIESLTADTFKLSCFQTLTGVKFIIV 576
+R + + I L AL L + KS G E A K ++ + G F
Sbjct: 324 EGIRRSNQQLISLKDQ---TTALEYDLQQVQKSLGTEEQEAQHIK-DVYELIDG--FSSN 377
Query: 577 TDTNMQGTDVVLKRIYELYSDYALKNPFYSLE 672
+M+ + +R L S++ + YSLE
Sbjct: 378 RSPSMEECQELFRR---LRSEFPHEYELYSLE 406
>DQ342049-1|ABC69941.1| 830|Caenorhabditis elegans STIP protein.
Length = 830
Score = 31.9 bits (69), Expect = 0.46
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 2/152 (1%)
Frame = +1
Query: 223 QYENKKVVVAFGQRDGINVGHVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYPL--SLKF 396
QY N KV+ G++ I G+ S+ ++ R VFD+ E N L L
Sbjct: 278 QYSNIKVIDMTGKQQKIYSGYDSFSMKTRSEYDTVDDEERTVFDVPELIHNLNLLVDLTE 337
Query: 397 GRVRATTNEKIVLASMFYPLFALASQLSPIPKSSGIESLTADTFKLSCFQTLTGVKFIIV 576
+R + + I L AL L + KS G E A K ++ + G F
Sbjct: 338 EGIRRSNQQLISLKDQ---TTALEYDLQQVQKSLGTEEQEAQHIK-DVYELIDG--FSSN 391
Query: 577 TDTNMQGTDVVLKRIYELYSDYALKNPFYSLE 672
+M+ + +R L S++ + YSLE
Sbjct: 392 RSPSMEECQELFRR---LRSEFPHEYELYSLE 420
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 195 RFLSLHSRNIVIVVVDETTRLANNINSVYNHFIIFFNCSV 76
RF +H IV V++ +ANNIN++Y +I + ++
Sbjct: 225 RFFEVHISKIVFVII--AIFIANNINALYIPLVILLSLAI 262
>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
protein C06A5.1 protein.
Length = 1932
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 594 LHISVCYYYKFYTSECLKTRQLECVS 517
LH S+C Y+ Y CLK Q++ ++
Sbjct: 1055 LHTSLCEYFLQYVDTCLKNHQIKNIT 1080
>U37548-4|AAA79200.2| 373|Caenorhabditis elegans Hypothetical
protein C54D2.1 protein.
Length = 373
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 329 VVLPVTGDPFTDSNTCPTFIPSLWPNATTT 240
V +PV P T + T PT +P+ P ATTT
Sbjct: 118 VPVPVPTAPATVAPTAPTDLPTPAPEATTT 147
>U41556-3|AAM51519.1| 378|Caenorhabditis elegans Cysteine protease
related protein6, isoform b protein.
Length = 378
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 271 INVGHVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYP 381
+ V HV LSV G +T + + D+ + ++++N+P
Sbjct: 79 MGVNHVRLSVKGKQHLSKTKDLDLDIPESFDSRDNWP 115
>U41556-2|ABS19475.1| 369|Caenorhabditis elegans Cysteine protease
related protein6, isoform c protein.
Length = 369
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 271 INVGHVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYP 381
+ V HV LSV G +T + + D+ + ++++N+P
Sbjct: 70 MGVNHVRLSVKGKQHLSKTKDLDLDIPESFDSRDNWP 106
>U41556-1|AAK39189.1| 379|Caenorhabditis elegans Cysteine protease
related protein6, isoform a protein.
Length = 379
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 271 INVGHVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYP 381
+ V HV LSV G +T + + D+ + ++++N+P
Sbjct: 80 MGVNHVRLSVKGKQHLSKTKDLDLDIPESFDSRDNWP 116
>L39939-1|AAA98789.1| 379|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 379
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 271 INVGHVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYP 381
+ V HV LSV G +T + + D+ + ++++N+P
Sbjct: 80 MGVNHVRLSVKGKQHLSKTKDLDLDIPESFDSRDNWP 116
>L39894-1|AAA98787.1| 379|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 379
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 271 INVGHVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYP 381
+ V HV LSV G +T + + D+ + ++++N+P
Sbjct: 80 MGVNHVRLSVKGKQHLSKTKDLDLDIPESFDSRDNWP 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,766,104
Number of Sequences: 27780
Number of extensions: 326154
Number of successful extensions: 1162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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