Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0046
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02280.1 68418.m00151 synbindin, putative similar to Swiss-Pr...   116   2e-26
At1g51160.1 68414.m05752 synbindin, putative similar to Swiss-Pr...    59   2e-09
At5g59130.1 68418.m07411 subtilase family protein contains simil...    38   0.005
At1g05140.1 68414.m00517 membrane-associated zinc metalloproteas...    32   0.32 
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    29   2.3  
At1g42460.1 68414.m04896 Ulp1 protease family protein contains P...    29   3.9  
At5g02310.1 68418.m00154 eceriferum3 protein, putative similar t...    28   5.2  
At4g37880.1 68417.m05357 expressed protein                             28   5.2  
At3g30320.1 68416.m03828 hypothetical protein                          27   9.1  
At1g02400.1 68414.m00186 gibberellin 2-oxidase, putative / GA2-o...    27   9.1  

>At5g02280.1 68418.m00151 synbindin, putative similar to
           Swiss-Prot:Q9ES56 synbindin (TRS23 homolog) [Mus
           musculus]
          Length = 141

 Score =  116 bits (279), Expect = 2e-26
 Identities = 52/98 (53%), Positives = 70/98 (71%)
 Frame = +1

Query: 406 RATTNEKIVLASMFYPLFALASQLSPIPKSSGIESLTADTFKLSCFQTLTGVKFIIVTDT 585
           R  TN+ + +AS+++ + A++ QLSP+   SGIE L ADTF L CFQ+L G KF +V + 
Sbjct: 27  RMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIELLEADTFDLHCFQSLPGTKFFVVCEP 86

Query: 586 NMQGTDVVLKRIYELYSDYALKNPFYSLEMPIRCELFD 699
                + +L+ IYELY+DY LKNPFY +EMPIRCELFD
Sbjct: 87  GTPHMESLLRYIYELYTDYVLKNPFYEIEMPIRCELFD 124



 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 109 IYGIYIVSKSGGLIYNYD 162
           IY +YI++KSGGLI+  D
Sbjct: 4   IYSLYIINKSGGLIFYKD 21


>At1g51160.1 68414.m05752 synbindin, putative similar to
           Swiss-Prot:Q9ES56 synbindin (TRS23 homolog) [Mus
           musculus]
          Length = 169

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 29/65 (44%), Positives = 39/65 (60%)
 Frame = +1

Query: 508 SLTADTFKLSCFQTLTGVKFIIVTDTNMQGTDVVLKRIYELYSDYALKNPFYSLEMPIRC 687
           S   +T+KLS  +T +G+K I+VT          LK IY LY +Y +KNP YS   PI+ 
Sbjct: 95  SFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVKNPIYSPGSPIKS 154

Query: 688 ELFDT 702
           ELF+T
Sbjct: 155 ELFNT 159


>At5g59130.1 68418.m07411 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]
          Length = 732

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
 Frame = +1

Query: 298 VNGSPVTGRTTEDNRDVFDIIEAKENYPLS-LKFGRVRATTNEKIVLASMFYPLFALASQ 474
           +NG PV+G   +D   V    +++++   + LK   +   T  KI+  S   P   +A  
Sbjct: 417 INGLPVSGLQKDDFESVLSYFKSEKSPEAAVLKSESIFYQTAPKILSFSSRGPNIIVADI 476

Query: 475 LSPIPKSSGIESLTADTFKLSCFQTLTGVKFIIVTDTNM 591
           L P   + G+E L A++ + S F     VK+ + + T+M
Sbjct: 477 LKPDITAPGLEILAANSLRASPFYDTAYVKYSVESGTSM 515


>At1g05140.1 68414.m00517 membrane-associated zinc metalloprotease,
           putative similar to Hypothetical zinc metalloprotease
           All3971 (SP:Q8YQ64) [strain PCC 7120] {Anabaena sp.};
           Similar to Synechocystis hypothetical protein
           (gb|D90908);contains Pfam PF00595: PDZ domain (Also
           known as DHR or GLGF); contains TIGRFAM TIGR00054:
           membrane-associated zinc metalloprotease, putative
          Length = 441

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 18/74 (24%), Positives = 37/74 (50%)
 Frame = +1

Query: 262 RDGINVGHVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYPLSLKFGRVRATTNEKIVLAS 441
           RDG+  G V+L+V+G+ ++   ++    V D+++    + + L+  R + +   +I    
Sbjct: 220 RDGLLPGDVILAVDGTELSNSGSDSVSKVVDVVKRNPEHNVLLRIERGKESFEIRITPDK 279

Query: 442 MFYPLFALASQLSP 483
            F     +  QLSP
Sbjct: 280 SFDGTGKIGVQLSP 293


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
           similarity to flagelliform silk protein [Nephila
           clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 243 CCGIWPKRWNKCWTCITISKW 305
           CCG+  + W +CW C     W
Sbjct: 29  CCGLCGRFWFRCWFCCWFQFW 49


>At1g42460.1 68414.m04896 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 762

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 289 LLSVNGSPVTGRTTEDNRDVFDIIEAKENY 378
           L  + G  + G     N+++FDIIE K+++
Sbjct: 559 LSKLKGKSIVGEVALSNKEIFDIIERKKHF 588


>At5g02310.1 68418.m00154 eceriferum3 protein, putative similar to
            eceriferum3 GI:1669655 from [Arabidopsis thaliana]
          Length = 2006

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 343  LYCLPLFFLSLEIHLLIVIHVQH 275
            L+CLP  FL+ E  LL ++H+ H
Sbjct: 1671 LFCLPFPFLTCEESLLSLVHIFH 1693


>At4g37880.1 68417.m05357 expressed protein
          Length = 388

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 269 PSLWPNATTTFLFSYCNLISRGNPNVFSVS 180
           P+LW NA       YCNL+   + +  S++
Sbjct: 251 PALWNNAVKELTRQYCNLLGESSESPLSIT 280


>At3g30320.1 68416.m03828 hypothetical protein
          Length = 695

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +1

Query: 190 KTFGFPLDIKLQYENKKVVVAFGQRDGINVGHVLLSVN 303
           K FGFP+  +L+Y  K + +A   + G++V  VL SVN
Sbjct: 474 KEFGFPVQGQLRYFVKGLTLAL--QTGVDVKFVLDSVN 509


>At1g02400.1 68414.m00186 gibberellin 2-oxidase, putative /
           GA2-oxidase, putative similar to GA2ox2 [GI:4678368];
           similar to dioxygenase GI:1666096 from [Marah
           macrocarpus]; contains PF03171 2OG-Fe(II) oxygenase
           superfamily domain
          Length = 329

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +1

Query: 346 VFDIIEAKENYPLSLKFGRVRATTNEKIVLASMFYPLFALASQLSPIPK 492
           V D ++A  N   +    RV A T +K  +++M++    L +++SP+PK
Sbjct: 243 VGDCLQALTNGRFTSVRHRVLANTAKKPRMSAMYFAAPPLEAKISPLPK 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,635,714
Number of Sequences: 28952
Number of extensions: 296929
Number of successful extensions: 709
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)