Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0045
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   1.9  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   1.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   1.9  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   5.8  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   7.7  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   7.7  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 602 PQPWPAYEQPHRISCRPPQRGTWLPS 525
           P P+P +  P+    RPPQ   + P+
Sbjct: 153 PTPFPRFIPPNAYRFRPPQNPRFGPT 178


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 602 PQPWPAYEQPHRISCRPPQRGTWLPS 525
           P P+P +  P+    RPPQ   + P+
Sbjct: 153 PTPFPRFIPPNAYRFRPPQNPRFGPT 178


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 602 PQPWPAYEQPHRISCRPPQRGTWLPS 525
           P P+P +  P+    RPPQ   + P+
Sbjct: 391 PTPFPRFIPPNAYRFRPPQNPRFGPT 416


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 461 RKVLENRSLADEERMDALENQLKEARFLA 547
           R+    R+    E++ ALEN+ K  R+L+
Sbjct: 6   REARRARTAFTYEQLVALENKFKTTRYLS 34


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 449 SERARKVLENRSLADEERMDALENQLKEARFLAEEADKK 565
           SER     EN  L  E+   ALE+ LK    + E+ +++
Sbjct: 95  SERRNIFGENDELIAEKVAHALESGLKVIACIGEKLEER 133


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = -3

Query: 623 PR-RAPSQPQPWPAYEQPHRISCRPP 549
           PR R    P P+P +  P+    RPP
Sbjct: 146 PRFRCIGPPTPFPRFIPPNAYRFRPP 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,646
Number of Sequences: 438
Number of extensions: 3029
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)