Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0043
         (671 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00005184AD Cluster: PREDICTED: hypothetical protein;...    44   0.003
UniRef50_Q8MMC8 Cluster: CG9047-PA, isoform A; n=4; Sophophora|R...    34   3.6  
UniRef50_Q7YYX3 Cluster: Putative uncharacterized protein; n=2; ...    33   6.3  
UniRef50_Q0D417 Cluster: Os07g0654400 protein; n=9; Oryza sativa...    33   8.3  

>UniRef50_UPI00005184AD Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 89

 Score = 44.4 bits (100), Expect = 0.003
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +1

Query: 124 MVYVTGDGTIVEKTPF--SFMGWFWALLNFFSLLFHTLIDSNYNKHGKKYTRDFR 282
           MVYV  DG+++  TP       +F  ++    + F TLI+ N NK+G +YT D+R
Sbjct: 1   MVYVLNDGSVLCGTPLYLKVFRFFTGIIFMIIMFFKTLINPNMNKYGSEYTTDYR 55


>UniRef50_Q8MMC8 Cluster: CG9047-PA, isoform A; n=4; Sophophora|Rep:
           CG9047-PA, isoform A - Drosophila melanogaster (Fruit
           fly)
          Length = 661

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
 Frame = +1

Query: 148 TIVEKTPFSFMGWFWA--LLNFFSLLF 222
           TI+E+  F F+G+ WA  L+NFF +LF
Sbjct: 22  TIIERQVFDFLGYMWAPILVNFFHILF 48


>UniRef50_Q7YYX3 Cluster: Putative uncharacterized protein; n=2;
           Apicomplexa|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum
          Length = 80

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +3

Query: 411 VITFQY*QYLKKTNIVLCISMYEKNNIFYLSLFKHLNYIQF 533
           ++ F    YLK TN  L I+M+E N  FY  L   +NYI F
Sbjct: 15  ILIFCNIHYLKYTNTKLNITMFE-NFFFYFFLILQINYISF 54


>UniRef50_Q0D417 Cluster: Os07g0654400 protein; n=9; Oryza
           sativa|Rep: Os07g0654400 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 1054

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 333 KAPKLFGWWFRRPTSWWSEIPCVFFAMFIIVRIY 232
           + P+   WW RR  S WS +  +    F ++R Y
Sbjct: 330 RKPRTCNWWPRRAISLWSPVVAILLLAFAVLRYY 363


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 563,991,207
Number of Sequences: 1657284
Number of extensions: 10029690
Number of successful extensions: 25213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25191
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)