Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0042
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    27   1.7  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   5.2  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   6.8  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   6.8  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   9.0  

>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -1

Query: 52 LKLSSLFECLKYVTIV 5
          +KLSSL EC+KY TI+
Sbjct: 8  IKLSSLNECIKYSTII 23


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 18  YFKHSNKEDNLSSIAAFIVQNKFSDDLEQD 107
           Y  H++     + IAAF+V  KF D   +D
Sbjct: 700 YIDHTSDVQTAALIAAFVVPKKFLDKRAED 729


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 442 LDNSNEKIIAI*QNDALIRTHRRPTLDNSKIQRERGRMIV-TKVMKKHF 585
           L N+N+K+    +N  ++  +R+PTL    +   + R++   K ++ H+
Sbjct: 586 LINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHY 634


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 42  DNLSSIAAFIVQNKFSDDLEQDLMSRKIYIYSRRLSL 152
           D  S + A    N FS D+E ++ S    +Y RR+S+
Sbjct: 648 DRDSIVIATNTTNSFSPDVESEVESYFQALYERRISI 684


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 204 SKGGVAVVAILRSWNLYLEV 263
           SKG V V AI RSW+LY+ +
Sbjct: 70  SKGNVIVKAI-RSWSLYVAI 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,402
Number of Sequences: 5004
Number of extensions: 53251
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)