BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NRPG0042 (631 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_23012| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58 SB_38828| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1 SB_32283| Best HMM Match : Homeobox (HMM E-Value=4.5e-20) 27 9.5 SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0) 27 9.5 >SB_23012| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 210 Score = 31.5 bits (68), Expect = 0.58 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +2 Query: 398 KISLYFELNQYIFMHLIIRTKKSLLYNKTTR*FELIGVQRSTIQRYRE 541 K+ L+ + +Y F+H RTKKS T+ + G Q S +R E Sbjct: 30 KLDLHVKFQEYTFLHSNTRTKKSRYNQSNTKAWVTCGEQNSNDRRGEE 77 >SB_38828| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 62 Score = 29.1 bits (62), Expect = 3.1 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = -1 Query: 316 GVKWLLEPIDIYNVNAPPTSRYKFQDLSIA-TTATPP 209 G+ W+++ ID++ V+ P K+ D +A +A PP Sbjct: 4 GILWVVQSIDLWLVSRPTEGTMKYSDRHLAGLSARPP 40 >SB_32283| Best HMM Match : Homeobox (HMM E-Value=4.5e-20) Length = 398 Score = 27.5 bits (58), Expect = 9.5 Identities = 17/56 (30%), Positives = 31/56 (55%) Frame = -1 Query: 298 EPIDIYNVNAPPTSRYKFQDLSIATTATPPFEPKRIIAIERF*LSQVGINESRRLY 131 E + +N+++ T+ +DLS T+TP E + +I+R LS +++SR Y Sbjct: 28 ELVPTHNISSASTTS-SHEDLSSVHTSTPKSEQRHGFSIKREHLSCDTVSQSRSPY 82 >SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0) Length = 1457 Score = 27.5 bits (58), Expect = 9.5 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = +3 Query: 90 DDLEQDLMSRKIYIYSRRLSLIPTCDN*NLSIAIMRFGSKGGVAVVAIL 236 DD E + IY+ R +LIP CD S+ +R S+ +A + +L Sbjct: 686 DDSESSWTDTETRIYAARSNLIPVCD----SLFSVRTASRENLAKIPLL 730 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,570,094 Number of Sequences: 59808 Number of extensions: 377582 Number of successful extensions: 679 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 640 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 679 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1572561250 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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