Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0042
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeo...    29   2.7  
U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeo...    29   2.7  
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    28   4.8  

>Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical
           protein R07B5.6 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
 Frame = -3

Query: 578 FFITFVTIIRPLSLCIFELSSVGRR*VRINASFCYIAMIFSFELSSA*K--CIDLVRNIK 405
           F+  +  +I PL LC+  L  +     + +   C   MI S  L       C   +    
Sbjct: 113 FYFNYCILILPLLLCLIRLIILIYP--KDHPMICSKIMIISLPLLFLIPLCCTSFMIPAL 170

Query: 404 RFCRELVITLNFFILFFYCLGGW 336
            +CR++   LN+   + Y  GGW
Sbjct: 171 GYCRQMGSPLNYGATYIYYSGGW 193


>U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform a protein.
          Length = 632

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 493 IRTHRRPTLDNSKIQRERGRMIVTKVMKKHFRHFF 597
           +RTHRR T D+     +R R++ T + K+  +  F
Sbjct: 403 VRTHRRSTSDHDGPVSKRPRLVFTDIQKRTLQAIF 437


>U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform b protein.
          Length = 641

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 493 IRTHRRPTLDNSKIQRERGRMIVTKVMKKHFRHFF 597
           +RTHRR T D+     +R R++ T + K+  +  F
Sbjct: 412 VRTHRRSTSDHDGPVSKRPRLVFTDIQKRTLQAIF 446


>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human niemann
            pick c disease)related protein 2 protein.
          Length = 1274

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 15   TYFKHSNKEDNLSSIAAFIVQNKFSDDLEQDL--MSRKIYIYS 137
            T+FK  N  D++    A+      +DD+E++L     K+Y+YS
Sbjct: 1024 TFFKKLNLSDSIQLYDAWRFAKYLADDIERELEIPGVKVYVYS 1066


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,188,104
Number of Sequences: 27780
Number of extensions: 297368
Number of successful extensions: 595
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)