Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0041
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    26   4.6  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    26   6.1  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   8.1  

>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 65  QFHDLLALLTMNFHSLHS 12
           +FH LL +L  N H+LHS
Sbjct: 256 KFHTLLDMLAENIHTLHS 273


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 195 NRSRVVVAVYFMGYCHQNS*CSLCGRIRVHYEFCFETCVGTTGGSAA 335
           +R   VV   F GY  Q   CS+C +    Y+   +  V   G S A
Sbjct: 241 SRETSVVHRIFGGYLRQQILCSVCKKPSNTYQALLDLSVDAKGSSLA 287


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 513 YGSHGRYCVWQQRRRRS 463
           Y  HG  CVWQ R +++
Sbjct: 247 YSHHGPMCVWQPRSQKN 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,828
Number of Sequences: 5004
Number of extensions: 55154
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)