Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0041
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26262| Best HMM Match : PHD (HMM E-Value=4.1)                       30   2.1  
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)                      29   2.8  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)                   28   6.5  
SB_15144| Best HMM Match : Folate_rec (HMM E-Value=0.0076)             28   8.6  

>SB_26262| Best HMM Match : PHD (HMM E-Value=4.1)
          Length = 367

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 607 SLLQQEPQNSV*HGTGCHGDSCSEPSEPCLQIWEPWKVLRVAAAEAPER 461
           SL   +P+  + H TGCH +   E  E    +W+P+   +  +  APER
Sbjct: 213 SLAPNKPKGQM-HSTGCHTERTQEMPE---NVWDPY-AFKHGSPAAPER 256


>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
          Length = 969

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 335 GCGTPGCANTGFKAEFIMNAYASTKR 258
           GCGTP C  +G K    MN Y++  R
Sbjct: 732 GCGTPVCEESGDKGNRKMNLYSNRPR 757


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
 Frame = -3

Query: 500 EGTACXXXXXXXXXWVRLCPTKLF-PR*REFCAPWGCPTAWFTVAT-LPLAG--LDCPPG 333
           EG  C            +CP   + P   E+   +GCP  ++  AT L  A   L CPPG
Sbjct: 301 EGHFCDNKNDLSDYTSYICPKGYYCPNGTEYSTQYGCPPGYYGNATKLHSASQCLPCPPG 360

Query: 332 --CGTPGCANTGFKAEFI-MNAYASTKRALAVLVTIAHEID 219
             C       T  KA+ +  +   +T RA+  L  IA  +D
Sbjct: 361 KFCLVHQHLTTMLKADAVRKDVTIATARAVP-LACIAMGLD 400


>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
          Length = 2865

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -1

Query: 607  SLLQQEPQNSV*HGTGCHGDSCSEP--SEPCLQIWEPWKVLRVAAAEAPERGGSDCAQLS 434
            S+L+  P ++V + T    ++ S P  S   +  W  W V   + A   +     C+ LS
Sbjct: 1561 SMLESTPTSAVPNVTVAPSETSSVPVASSAAIDTWSQWSVCSRSCAAGKQIRKRACSTLS 1620

Query: 433  C 431
            C
Sbjct: 1621 C 1621


>SB_15144| Best HMM Match : Folate_rec (HMM E-Value=0.0076)
          Length = 403

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 381 PRCRTPPRCAEFSSSREQLSWAQS 452
           P+CRTP RC  FS   +   + Q+
Sbjct: 168 PKCRTPNRCMAFSMVNKHFRYRQT 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,246,229
Number of Sequences: 59808
Number of extensions: 472158
Number of successful extensions: 1013
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)