Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0041
         (712 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X56811-1|CAA40148.1| 1408|Drosophila melanogaster Serrate protei...    31   1.2  
M35759-1|AAA28938.1| 1404|Drosophila melanogaster protein ( D.me...    31   1.2  
AE014297-4084|AAF56678.2| 1407|Drosophila melanogaster CG6127-PA...    31   1.2  
BT022671-1|AAY55087.1|  239|Drosophila melanogaster IP07674p pro...    29   4.7  
BT022607-1|AAY55023.1|  239|Drosophila melanogaster IP07774p pro...    29   4.7  
BT022539-1|AAY54955.1|  161|Drosophila melanogaster IP07874p pro...    29   4.7  
BT022467-1|AAY54883.1|  239|Drosophila melanogaster IP07974p pro...    29   4.7  
AY128478-1|AAM75071.1|  950|Drosophila melanogaster RE42104p pro...    29   4.7  
AE014298-2914|AAF49004.1|  227|Drosophila melanogaster CG14227-P...    29   4.7  
AY058638-1|AAL13867.1|  492|Drosophila melanogaster LD33732p pro...    29   8.2  
AE014296-326|AAF47543.2| 1062|Drosophila melanogaster CG7971-PA,...    29   8.2  
AE014296-325|AAZ66051.1|  849|Drosophila melanogaster CG7971-PD,...    29   8.2  
AE014296-324|AAF47542.2| 1107|Drosophila melanogaster CG7971-PC,...    29   8.2  

>X56811-1|CAA40148.1| 1408|Drosophila melanogaster Serrate protein
            protein.
          Length = 1408

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -1

Query: 565  TGCHGDSCSEPSEPCLQIWEPWKVLRVAAAEAPERGGSDCAQLSCSRDEENSAHLGGVLQ 386
            TGC+   C      C+    P K L+     AP   G  CA+ +  +      H GG  +
Sbjct: 839  TGCYAGQCQNGGT-CMP-GAPDKALQPHCRCAPGWTGLFCAE-AIDQCRGQPCHNGGTCE 895

Query: 385  RGSQWLRCL 359
             G+ W RC+
Sbjct: 896  SGAGWFRCV 904


>M35759-1|AAA28938.1| 1404|Drosophila melanogaster protein (
            D.melanogaster serrate(Ser) mRNA, complete cds. ).
          Length = 1404

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -1

Query: 565  TGCHGDSCSEPSEPCLQIWEPWKVLRVAAAEAPERGGSDCAQLSCSRDEENSAHLGGVLQ 386
            TGC+   C      C+    P K L+     AP   G  CA+ +  +      H GG  +
Sbjct: 835  TGCYAGQCQNGGT-CMP-GAPDKALQPHCRCAPGWTGLFCAE-AIDQCRGQPCHNGGTCE 891

Query: 385  RGSQWLRCL 359
             G+ W RC+
Sbjct: 892  SGAGWFRCV 900


>AE014297-4084|AAF56678.2| 1407|Drosophila melanogaster CG6127-PA
            protein.
          Length = 1407

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -1

Query: 565  TGCHGDSCSEPSEPCLQIWEPWKVLRVAAAEAPERGGSDCAQLSCSRDEENSAHLGGVLQ 386
            TGC+   C      C+    P K L+     AP   G  CA+ +  +      H GG  +
Sbjct: 838  TGCYAGQCQNGGT-CMP-GAPDKALQPHCRCAPGWTGLFCAE-AIDQCRGQPCHNGGTCE 894

Query: 385  RGSQWLRCL 359
             G+ W RC+
Sbjct: 895  SGAGWFRCV 903


>BT022671-1|AAY55087.1|  239|Drosophila melanogaster IP07674p
           protein.
          Length = 239

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 342 STGLRNPR-LCQHRFQSRIHNERVCVH-KASTSCFGDN 235
           S G R  R LC  +FQ ++   ++CVH + S +C GD+
Sbjct: 148 SVGDRIDRELCTLKFQQQVDESQICVHTETSHACKGDS 185


>BT022607-1|AAY55023.1|  239|Drosophila melanogaster IP07774p
           protein.
          Length = 239

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 342 STGLRNPR-LCQHRFQSRIHNERVCVH-KASTSCFGDN 235
           S G R  R LC  +FQ ++   ++CVH + S +C GD+
Sbjct: 148 SVGDRIDRELCTLKFQQQVDESQICVHTETSHACKGDS 185


>BT022539-1|AAY54955.1|  161|Drosophila melanogaster IP07874p
           protein.
          Length = 161

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 342 STGLRNPR-LCQHRFQSRIHNERVCVH-KASTSCFGDN 235
           S G R  R LC  +FQ ++   ++CVH + S +C GD+
Sbjct: 99  SVGDRIDRELCTLKFQQQVDESQICVHTETSHACKGDS 136


>BT022467-1|AAY54883.1|  239|Drosophila melanogaster IP07974p
           protein.
          Length = 239

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 342 STGLRNPR-LCQHRFQSRIHNERVCVH-KASTSCFGDN 235
           S G R  R LC  +FQ ++   ++CVH + S +C GD+
Sbjct: 148 SVGDRIDRELCTLKFQQQVDESQICVHTETSHACKGDS 185


>AY128478-1|AAM75071.1|  950|Drosophila melanogaster RE42104p
           protein.
          Length = 950

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -1

Query: 562 GCHGDSCSEPSEPCLQIWEPWKVLRVAAAEAPERGGSDCAQLSCSRDEENSAHLGGVLQR 383
           GC+   C      C+    P K L+     AP   G  CA+ +  +      H GG  + 
Sbjct: 613 GCYAGQCQNGGT-CMP-GAPDKALQPHCRCAPGWTGLFCAE-AIDQCRGQPCHNGGTCES 669

Query: 382 GSQWLRCL 359
           G+ W RC+
Sbjct: 670 GAGWFRCV 677


>AE014298-2914|AAF49004.1|  227|Drosophila melanogaster CG14227-PA
           protein.
          Length = 227

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 342 STGLRNPR-LCQHRFQSRIHNERVCVH-KASTSCFGDN 235
           S G R  R LC  +FQ ++   ++CVH + S +C GD+
Sbjct: 136 SVGDRIDRELCTLKFQQQVDESQICVHTETSHACKGDS 173


>AY058638-1|AAL13867.1|  492|Drosophila melanogaster LD33732p
           protein.
          Length = 492

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 354 RQRQRSHCEPRCRTPPRCAEFSSSREQ 434
           RQR RS    RC+  P+C E   SRE+
Sbjct: 111 RQRSRSKDALRCKEKPQCNEKERSRER 137


>AE014296-326|AAF47543.2| 1062|Drosophila melanogaster CG7971-PA,
           isoform A protein.
          Length = 1062

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 354 RQRQRSHCEPRCRTPPRCAEFSSSREQ 434
           RQR RS    RC+  P+C E   SRE+
Sbjct: 468 RQRSRSKDALRCKEKPQCNEKERSRER 494


>AE014296-325|AAZ66051.1|  849|Drosophila melanogaster CG7971-PD,
           isoform D protein.
          Length = 849

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 354 RQRQRSHCEPRCRTPPRCAEFSSSREQ 434
           RQR RS    RC+  P+C E   SRE+
Sbjct: 468 RQRSRSKDALRCKEKPQCNEKERSRER 494


>AE014296-324|AAF47542.2| 1107|Drosophila melanogaster CG7971-PC,
           isoform C protein.
          Length = 1107

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 354 RQRQRSHCEPRCRTPPRCAEFSSSREQ 434
           RQR RS    RC+  P+C E   SRE+
Sbjct: 468 RQRSRSKDALRCKEKPQCNEKERSRER 494


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,220,593
Number of Sequences: 53049
Number of extensions: 703565
Number of successful extensions: 1560
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)