Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0041
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02990.1 68418.m00243 kelch repeat-containing F-box family pr...    30   1.3  
At1g31070.2 68414.m03804 UDP-N-acetylglucosamine pyrophosphoryla...    27   9.3  

>At5g02990.1 68418.m00243 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 548

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = +3

Query: 303 TCVGTTGGS--AARW---TI*SRQRQRSHCEPRCRTPPRCAEFSSSREQL 437
           T VG +GG    A W    +  R R RSH   +C+T   CAE S  R  L
Sbjct: 475 TYVGNSGGGRRVAIWWKSMVVFRPRGRSHSTKKCKTEIWCAEISVERRGL 524


>At1g31070.2 68414.m03804 UDP-N-acetylglucosamine
           pyrophosphorylase-related low similarity to SP|P43123
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           {Saccharomyces cerevisiae}
          Length = 505

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -1

Query: 478 AEAPERGGSDCAQLSCSRDEENSAHLGGVLQRGSQWLRCLWRD*IVHRAAEP 323
           A+AP+  G   A L CSR  E+ A       RG +++ C   D ++ R A+P
Sbjct: 247 AKAPDGNGGVYAALKCSRLLEDMA------SRGIKYVDCYGVDNVLVRVADP 292


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,303,323
Number of Sequences: 28952
Number of extensions: 312935
Number of successful extensions: 663
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)