Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0039
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 33 0.050
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 31 0.15
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 27 1.9
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 27 1.9
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 27 2.5
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 26 4.3
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 25 7.6
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 25 7.6
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 10.0
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 10.0
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 25 10.0
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 10.0
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 32.7 bits (71), Expect = 0.050
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Frame = +2
Query: 485 GHVILGMNTV---QLYMKVPGSRTPGHQENNNFCSINL---NIGPGDCEWFGVPDAYWGG 646
G + LG+NTV Q+ +K+ + HQ F N+ NIG WFGV ++Y
Sbjct: 24 GQIYLGLNTVNGEQVAVKLEPLKARHHQLEYEFRVYNILKGNIGIPTIRWFGVTNSYNAM 83
Query: 647 VREL 658
V +L
Sbjct: 84 VMDL 87
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 31.1 bits (67), Expect = 0.15
Identities = 29/101 (28%), Positives = 44/101 (43%)
Frame = +2
Query: 179 DATGRRRVWACASHRSHTTVRKYAQYQAGSFQESLREERERAAPLSDSDSGPAKRRRAAR 358
D RR +C S RKY QYQ S ++++ R +SD +S PA R A
Sbjct: 124 DGKVRRDFGSCQITPSAKQQRKYLQYQI-SEDDAIKNRMFRR--MSDLESYPAVMRDVAE 180
Query: 359 MLRFGTNVDLSDERKWRPQLAELQKLPAFARVASAANMLSH 481
+ ++L + R L EL+KL + S + + H
Sbjct: 181 LKDDNERLNLDTIK--RNALVELKKLRLIKQQESLRHQVMH 219
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 239 RKYAQYQAGSFQESLREERERAAPLSDSD 325
RKY Q+ S+++ + ++R P+SDSD
Sbjct: 155 RKYPQHSLESWRQHYKYMKKRLPPVSDSD 183
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 245 YAQYQAGSFQESLREERERAAPLSDSDSG 331
Y ++ A + ESLRE+R PLS+ +G
Sbjct: 206 YNKFNAKLYLESLREKRRTYTPLSEISNG 234
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 467 NMLSHVGHVILGMNTVQLYMKVPGSRTPGHQENNNFCSINLNIGPGDCE-WFGVP 628
++LS++ + + G+ LY+ + S H E+N S+N GD + W+G+P
Sbjct: 439 SLLSYIDNPVSGITCPWLYVGMCFSTFCWHVEDNYTYSVNYQ-HYGDTKLWYGIP 492
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 536 GSRTPGHQENNNFCSINLNIGPG 604
GS+TPGH E +N +N+ G G
Sbjct: 100 GSKTPGHPETHN-PDLNIETGAG 121
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +1
Query: 52 LRTHRRSQTRPRTVLDEDT 108
+R++RRS T R+V+D+D+
Sbjct: 6 VRSYRRSSTSKRSVIDDDS 24
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 663 SHSSRTPPQYASGTPNHSQSPGPILRLIE 577
S SR PP Y P S P PIL + E
Sbjct: 119 STPSRMPPHYVQPHPPFSVFPAPILDVRE 147
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 477 ESMLAAEATRANAGSFWSSASCGRHLRSSERSTLVPK 367
ES++A RANAG+ HLR ++++ + K
Sbjct: 5 ESLVAGRTRRANAGNKMRELLEKEHLRMTQQNAEIEK 41
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 435 SFWSSASCGRHLRSSERSTLVPKRSMRA 352
SFW CG R R+ +V K+ + A
Sbjct: 564 SFWLEEECGNLAREGLRTLVVAKKDLSA 591
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 272 QESLREERERAAPLSDSDSGPAKRRRAARMLRFGTNVDLSD 394
++ L +E +R PL+ S +KR+ AA L NV + D
Sbjct: 587 EKKLIDELDRVNPLNSSQLLRSKRKSAATALSMLQNVIMPD 627
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.0 bits (52), Expect = 10.0
Identities = 16/63 (25%), Positives = 23/63 (36%)
Frame = -2
Query: 537 PGTFMYNCTVFMPRMTCPTWESMLAAEATRANAGSFWSSASCGRHLRSSERSTLVPKRSM 358
P TF+ M +T P W + +T + + S SSE S+ P S
Sbjct: 107 PATFVSTPLYTMDNVTAPVWSNTSVPVSTPETSATSSSEFFTSYPATSSESSSSYPASST 166
Query: 357 RAA 349
A
Sbjct: 167 EVA 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,243
Number of Sequences: 5004
Number of extensions: 39262
Number of successful extensions: 154
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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