Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0039
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 34 0.12
05_04_0049 + 17497255-17497908 33 0.28
07_03_1292 - 25558643-25559376,25559989-25560097,25560578-255606... 32 0.36
04_04_1173 + 31469357-31469920 31 0.84
03_02_0890 + 12202056-12202152,12202527-12202765 31 0.84
07_03_1290 + 25537973-25538962 31 1.1
04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420... 31 1.1
09_01_0086 - 1225132-1225299,1225530-1225679,1227629-1228006,122... 30 1.5
12_01_0639 + 5383967-5385951,5386973-5387066,5387410-5387841,538... 30 1.9
03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514... 30 1.9
01_06_0464 + 29571791-29572240 29 3.4
11_06_0631 - 25656885-25657000,25658591-25658658,25658957-256589... 29 4.5
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 28 5.9
08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470 28 5.9
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309... 28 5.9
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 28 7.8
11_06_0545 + 24839536-24843421,24843871-24844310 28 7.8
09_01_0095 - 1403586-1403987,1406687-1406722,1406995-1407012,140... 28 7.8
08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999 28 7.8
05_02_0116 + 6773659-6774437,6775103-6775298,6775381-6775565,677... 28 7.8
05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,102... 28 7.8
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816... 28 7.8
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41... 28 7.8
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 362 LRFGTNVDLSDERKWRPQLA-ELQKLPAFARVASAANMLSHVGHVILGMNTVQLYMKVPG 538
LR + + L E W L+ + LP R +S AN V H++ G+ +QL++++P
Sbjct: 96 LRLDSEITLKQEIAWASHLSLQACVLPPPKR-SSCANYARVVNHILQGLTNLQLWLRIPL 154
Query: 539 SRTPGHQENNN 571
++ E+++
Sbjct: 155 EKSEPMDEDHD 165
>05_04_0049 + 17497255-17497908
Length = 217
Score = 32.7 bits (71), Expect = 0.28
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 11/124 (8%)
Frame = +2
Query: 224 SHTTVRKYAQYQAGSFQESLREERERAAPLSDSDSGPAKRRRAARMLRFGTNVDLSDERK 403
SH+T+ A+ +A + + R RER P ++ RR A G D D R
Sbjct: 47 SHSTLDLVARRRATAVGRNPRRRRERETPTRETGGVTRAARREAASRERGERGDGDDNRI 106
Query: 404 WR-------PQLAELQKLPAFARVASAAN---MLSHVGH-VILGMNTVQLYMKVPGSRTP 550
WR P + L + P A A N +++ VGH G P S TP
Sbjct: 107 WRRSNRTAPPPPSPLLEAPVLATEEHADNFVVVVAAVGHRAETGSGERPSRPSPPLSWTP 166
Query: 551 GHQE 562
H E
Sbjct: 167 PHGE 170
>07_03_1292 -
25558643-25559376,25559989-25560097,25560578-25560676,
25560797-25560893,25560973-25561027,25561072-25561187,
25561445-25561562,25562369-25562684
Length = 547
Score = 32.3 bits (70), Expect = 0.36
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 260 AGSFQESLRE---ERERAAPLSDSDSGPAKRRRAARMLRFGTNVD 385
AGS +ES E ERER S D G A R+ A +LR G N+D
Sbjct: 67 AGSEEESESESEAEREREPEQSGVDRGEASCRKIADLLRAGRNLD 111
>04_04_1173 + 31469357-31469920
Length = 187
Score = 31.1 bits (67), Expect = 0.84
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = +2
Query: 164 ADENWDATGRRRVWACASHR--SHTTVRKYAQYQAGSFQESLREERERAAP 310
ADE D R WACAS R T R +A F S+ R R P
Sbjct: 28 ADEEDDEARERSGWACASRRLGLPPTTRSFASPSLVLFDTSVSRSRHRCPP 78
>03_02_0890 + 12202056-12202152,12202527-12202765
Length = 111
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/26 (65%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 44 PWCCGLTAALKLDLGLFS-TKTLVEA 118
PWCCG AA LDL LFS T L EA
Sbjct: 4 PWCCGPLAAY-LDLSLFSLTNGLAEA 28
>07_03_1290 + 25537973-25538962
Length = 329
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +2
Query: 206 ACASHRSHTTVRKYAQYQAGSFQESLREERER---AAPLSDSDSGPAKRRRAARML 364
A AS RS R+ A +A S +R R AAP S S S ++ RRA R L
Sbjct: 109 AYASPRSPGRRRRIAAAEAAEVSSSSSSQRGRSGRAAPASSSSSASSRSRRATRSL 164
>04_04_1076 -
30639835-30640898,30641613-30641915,30642008-30642068,
30643076-30644380
Length = 910
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = -2
Query: 225 ERCEAQAHTR-------RRPVASQFSSADCMSCVRTSTAWSGHASTSVFVENSPRSSLR 70
ERCE + HT +RP S+ S RTS+A S H S S VE P SS R
Sbjct: 562 ERCEQRRHTGENIDDMPKRPPPSESHHGSSRSAKRTSSASSSHGS-SGSVEERPYSSGR 619
>09_01_0086 -
1225132-1225299,1225530-1225679,1227629-1228006,
1229103-1229150
Length = 247
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 264 PAWYCAYLRTVVWERCEAQAHTRRRPVASQFSSADCMSCVRT 139
P W LRT+ W +C+ A + S C++C++T
Sbjct: 61 PLWLNVLLRTIFWRKCDVHEQLENAHRAEE--SIFCINCLKT 100
>12_01_0639 +
5383967-5385951,5386973-5387066,5387410-5387841,
5387935-5388219,5388324-5388641,5388756-5388983,
5389264-5389364,5389447-5389552,5389782-5390132,
5390262-5390401,5390687-5390861,5390937-5390954
Length = 1410
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 299 RAAPLSDS-DSGPAKRRRAARMLRFGTNVDLSDERKWRPQL-AELQKLPAFARVASAANM 472
RA PLS + +G A R A + +L + K P L AEL++L R+ SA +
Sbjct: 27 RATPLSRALHAGAAAAARGAS----SSQAELRPDSKNAPALSAELRRLARVGRLPSALAL 82
Query: 473 LSHVGH 490
L H+ H
Sbjct: 83 LDHLSH 88
>03_03_0025 +
13848450-13849420,13850921-13851131,13851327-13851459,
13851576-13851832
Length = 523
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 254 YQAGSFQESLREERERAAPLSDSDSGPAKRRRAARMLR 367
YQ ++ ++ERE+A S SG A+RR A LR
Sbjct: 218 YQQRRQKQKQKQEREQATARHRSSSGAARRRSVAEALR 255
>01_06_0464 + 29571791-29572240
Length = 149
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 188 GRRRVWACASHRSHTTVRKYAQYQAGSFQESLREERERAAPLSDSD 325
GRRR A+ R H Y ++ AG E++R R R +D D
Sbjct: 97 GRRRGSTSAASRPHGGGEAYRRHAAGGRGEAVRARRRRHGAQADVD 142
>11_06_0631 -
25656885-25657000,25658591-25658658,25658957-25658996,
25659742-25659820,25659918-25661707,25662030-25662037,
25662305-25662367,25662504-25662820
Length = 826
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 11/47 (23%)
Frame = +1
Query: 334 RQATPRR-----------PHAPLRHQRRPLRRTQVAPAARGAPEASC 441
RQATPRR P+ P RRP + PA+RG P SC
Sbjct: 15 RQATPRRRGSRALHDLRLPNPPRLLARRPPTPADLHPASRGGPAFSC 61
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3
Query: 42 RRGAADSPPLSNSTSDCSRRRH*WR---RGPTTRSRCAR 149
RR A+ + S +C RRRH R R P TR C R
Sbjct: 74 RREGAEGAATAGSARNCRRRRHHPRIRLRPPPTRRHCER 112
>08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470
Length = 675
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 337 QATPRRPHAPLRHQRRPLRRTQVAPAARGAPEAS 438
+++ RP AP+R +RRPL+ V AA + A+
Sbjct: 3 RSSTTRPAAPVRLRRRPLKTPLVVAAAAASSSAA 36
>05_04_0148 -
18426903-18427106,18430516-18430594,18430752-18430935,
18431020-18431063,18432028-18432165,18432713-18434511
Length = 815
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -1
Query: 667 SLAQLAHASPVRVRNAEPLAVAGADIKVDRAKVVIFLMSWCATAGHLHVQLHSVHAEDDV 488
SL++L H P+++ E ++ D A+ L AT H H + ED+
Sbjct: 310 SLSRLGHEIPMQLNPLELAMEVTEQLEADHARFGAAL----ATTIHQHQHNKVIDDEDES 365
Query: 487 SDVGEH 470
S GEH
Sbjct: 366 SGAGEH 371
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 450 RANAGSFWSSASCGRHLRSSERSTLVPKRSMRAARRR 340
R AGS W++ +C SS R + P R+ ++RRR
Sbjct: 29 RDMAGSGWAADACCTAATSSTRRSRRPMRASASSRRR 65
>11_06_0545 + 24839536-24843421,24843871-24844310
Length = 1441
Score = 27.9 bits (59), Expect = 7.8
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 10/125 (8%)
Frame = +2
Query: 200 VWACASHRSHTTVRKYAQYQAGSFQESLREERERAAPLSDS----DSGPAKRRRAARMLR 367
VW A SH+T R + Q Q ++ + +R P S S D G R +L+
Sbjct: 512 VWVNAEEHSHSTARLRSILQQVEKQAQVQPQEQRQHPSSSSRDKKDGGDETTRLQQEILK 571
Query: 368 FGTN----VDLSDERKWRPQLAELQKLPAFARVASAA--NMLSHVGHVILGMNTVQLYMK 529
T + L+D + P L LP + SA + L + +G + L+
Sbjct: 572 HLTGKKFLIFLADHQDETPWTQILPALPTDSTNESAVILSPLVQQAYQYVGWYVLSLFFL 631
Query: 530 VPGSR 544
+ SR
Sbjct: 632 LKHSR 636
>09_01_0095 -
1403586-1403987,1406687-1406722,1406995-1407012,
1407331-1407513
Length = 212
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = -2
Query: 264 PAWYCAYLRTVVWERCEAQAHTRRRPVASQFSSADCMSCVRT 139
P W LRT W +C+ H + S C +C++T
Sbjct: 127 PLWLNVLLRTAFWRKCD--VHDQLENTHRAEESIFCTNCLKT 166
>08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999
Length = 698
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 239 RKYAQYQAGSFQESLREERERAAPLSDSDSGPAKRRRAARMLRFG 373
RK+ + GS + ++R+ R ++ + D+ G +RR A + RFG
Sbjct: 649 RKHPSFPVGSVK-AVRDVRISSSAIQDNSMGLRRRRPANQPFRFG 692
>05_02_0116 +
6773659-6774437,6775103-6775298,6775381-6775565,
6775746-6776079,6776174-6776378,6776692-6776834,
6777081-6777233
Length = 664
Score = 27.9 bits (59), Expect = 7.8
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = +2
Query: 128 HAVEVRTQLMQSADENWDATGRRRVWACASHRSHTTVRK-YAQYQAGSFQESLREERERA 304
H VR + + D R+ A AS + R QY+ G F+E+LR +RA
Sbjct: 148 HGSVVRARCAAPVSSSEDHASAVRMSAAASAEAEEVRRAGNEQYKNGCFEEALR-LYDRA 206
Query: 305 APLSDSDSGPAKRRRAARML---RFGTNVDLSDE 397
L DS + RAA ++ R G V+ +E
Sbjct: 207 LALC-PDSAACRANRAAALIGLTRLGEAVEECEE 239
>05_01_0154 +
1020650-1022050,1022304-1022373,1022496-1022617,
1022753-1023031,1023402-1023779,1024079-1024188,
1024394-1024622,1024725-1025303
Length = 1055
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = -1
Query: 676 EPVSLAQLAHASP---VRVRNAEPLAVAGADIKVDRAKVVIFLMSWCATAGHLHVQLHSV 506
E S+ + AH P ++ E + AG + A ++ G +H Q+H
Sbjct: 202 ETASVNKTAHQVPHDDADIQAKECMVFAGTTVVNGSAICLVVHTGMATEIGKIHAQIHEA 261
Query: 505 HAEDDVSDVGEHVGGGGDA 449
EDD + + + + G+A
Sbjct: 262 AQEDDDTPLKKKLNEFGEA 280
>04_03_0092 +
11079185-11079589,11081319-11081409,11081507-11081612,
11081694-11081976,11082062-11082210,11083582-11083735,
11083837-11084793
Length = 714
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 536 GSRTPGHQENNNFCSINLNIGP 601
GSRTPGH EN + + GP
Sbjct: 146 GSRTPGHPENFETPGVEVTTGP 167
>02_01_0055 +
410661-411380,411481-413733,414486-414875,414983-418153
Length = 2177
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 251 QYQAGSFQESLREERERAAPLSDSDS----GPAKRRRAARMLRFGTNVDLSDERKWRPQL 418
Q + +E L + R++ A +D D +RRRAA R + + L+D+ ++PQ
Sbjct: 61 QAKPPELEEKLTKSRKKKAAAADPDDLHRRDAKRRRRAAAAQREVSVLSLTDDVVYKPQT 120
Query: 419 AE 424
E
Sbjct: 121 KE 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,583,107
Number of Sequences: 37544
Number of extensions: 369491
Number of successful extensions: 1852
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1851
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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