Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0038
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    72   4e-14
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    57   2e-09
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    56   3e-09
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    52   5e-08
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    47   1e-06
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    44   1e-05
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    32   0.052
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    31   0.090
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   3.4  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   4.5  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   5.9  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   7.8  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   7.8  
SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar...    25   7.8  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   7.8  

>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 72.1 bits (169), Expect = 4e-14
 Identities = 34/90 (37%), Positives = 51/90 (56%)
 Frame = +2

Query: 98  IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXX 277
           + DS + K+ + +  DKLVV+DF ATWCGPCK I PK ++  +                 
Sbjct: 5   VSDSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQF-SNTYSDATFIKVDVDQLS 61

Query: 278 XXASEYNINSMPTFVFVKNGKKLDEFSGAN 367
             A+E  +++MP+F   KNG+K++E  GAN
Sbjct: 62  EIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 28/91 (30%), Positives = 47/91 (51%)
 Frame = +2

Query: 98  IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXX 277
           ++   D  TR++   DK+ V+DF A WCGPCK + P L+++ +E                
Sbjct: 22  VESFGDYNTRIS--ADKVTVVDFYADWCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFS 78

Query: 278 XXASEYNINSMPTFVFVKNGKKLDEFSGANV 370
             A +  + ++PT V  + G++LD   GA+V
Sbjct: 79  DIAQKNGVYALPTMVLFRKGQELDRIVGADV 109


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 56.0 bits (129), Expect = 3e-09
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 152 VVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXX-ASEYNINSMPTFVFV 328
           + +D  A WCGPCK I P   ++A++                   AS   + +MPTFVF 
Sbjct: 22  LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFF 81

Query: 329 KNGKKLDEFSGAN 367
           +NGK++D  +GAN
Sbjct: 82  ENGKQIDMLTGAN 94


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 52.0 bits (119), Expect = 5e-08
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +2

Query: 143 DKLVVIDFMATWCGPCKMIGPKLDEIAAEM-XXXXXXXXXXXXXXXXXASEYNINSMPTF 319
           DK++++ F A WCG CK + P+ +  A E+                   SEY+I   PT 
Sbjct: 39  DKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTL 98

Query: 320 VFVKNGKKLDEFSG 361
              KNGK++ ++SG
Sbjct: 99  NVFKNGKQISQYSG 112



 Score = 36.7 bits (81), Expect = 0.002
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +2

Query: 146 KLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVF 325
           K V+++F A WCG CK + P  +++A E                   S  +I+  PT +F
Sbjct: 374 KDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMF 432

Query: 326 VKNGKKLD 349
            K   K++
Sbjct: 433 FKANDKVN 440


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 23/94 (24%), Positives = 42/94 (44%)
 Frame = +2

Query: 86  MSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXX 265
           MS+ I   +  +  L    +++++++F A W  PCK +    D+ A +            
Sbjct: 1   MSVEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKD-TKNAVFLKIEA 59

Query: 266 XXXXXXASEYNINSMPTFVFVKNGKKLDEFSGAN 367
                 A  +++N++P FV +   K L   SGAN
Sbjct: 60  EKFSDIAESFDVNAVPLFVLIHGAKVLARISGAN 93


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
 Frame = +2

Query: 50  VILFLVSIYLPKMSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAA- 226
           VI  L ++      + ++  ++L+  +  A  K  +I+F ATWCG CK + P  +E+ A 
Sbjct: 9   VIFALFALVFASGVVELQSLNELENTI-RASKKGALIEFYATWCGHCKSLAPVYEELGAL 67

Query: 227 -EMXXXXXXXXXXXXXXXXXASEYNINSMPTFV-FVKNGKKLDEFSGA 364
            E                  A +Y+I   PT + F  +G +  ++S A
Sbjct: 68  FEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNA 115



 Score = 30.3 bits (65), Expect = 0.16
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 146 KLVVIDFMATWCGPCKMIGPKLDEI 220
           K V+++F A WCG CK + P  + +
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETL 183


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 31.9 bits (69), Expect = 0.052
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
 Frame = +2

Query: 104 DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXX 283
           +S + +  +   G  LVV  F A WCG CK + P   ++A+ +                 
Sbjct: 37  NSKNFRKFVKAKGPSLVV--FYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNR 94

Query: 284 A--SEYNINSMPTFVFVKNGKKLDEFSGAN 367
           A  S+Y +   PT   V    K    S  +
Sbjct: 95  AVCSQYQVQGFPTIKLVYPSSKGSSLSSTD 124


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 31.1 bits (67), Expect = 0.090
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
 Frame = +2

Query: 5   FGTRVTACFLFAF*TVILFLVSIYLPKMSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCG 184
           FG+ +   ++ AF T++  LVS       + + D+D L++ +++       I +    CG
Sbjct: 6   FGSVMRISWVVAFITMVQTLVS------GVPLTDND-LESEVSKG---TWFIKYYLPSCG 55

Query: 185 PCKMIGPKLD---EIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVFVKNGKKLDE 352
            CK +GP  D   E A E                  +S  NI ++PT    +NG+ ++E
Sbjct: 56  ACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVEE 114


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 4   IRHEG-HCVFLICILNCDIIF 63
           IR +G  C+ L+C+LN D+ F
Sbjct: 537 IREKGLECLSLVCLLNADLAF 557


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -2

Query: 397 FKDSCFEFVDVSAREFVQFLAILNEDERRHRVNVVLAGDVLALINVHLHNDDGI*HFGG 221
           F  + +E+VD ++ + + F+  L  +      ++   GD +  INV L + D   +FGG
Sbjct: 114 FSANLYEYVDGNS-DGISFVLNLENNNDTSVYHMTFHGDRVKPINVFLGSTDVTPNFGG 171


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 104 DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAA 226
           + D +  RL EAG  +     +A  CGPC  +  + D+IA+
Sbjct: 431 ERDGITERLEEAGATV-----LANACGPCIGMWKRTDDIAS 466


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -2

Query: 148 LVACFRQPCLQVVGIFDVNGHLGQI 74
           L++CF  PC  ++G      H+  +
Sbjct: 523 LISCFEAPCSYIIGTLSYFFHMDDV 547


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 439 PSAAAYNFSLYLLVFKDSCFEFVDVSAREFVQ-FLAILNEDERRHRVNVVLAGDVLAL 269
           P++AA+   L   +F D+ FEF+    +E ++ FL +L E     R+  +L   VL L
Sbjct: 434 PNSAAHQSLLNTNMFNDANFEFM---VKEHIKNFLKLLKEHNNPVRIIKLLDCLVLTL 488


>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 142 ACFRQPCLQVVGIFD 98
           A F+QPCL+ +G FD
Sbjct: 34  ATFKQPCLEHMGKFD 48


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 364 SAREFVQFLAILNEDERRHRVNVVLAGDV 278
           S+RE + F  ++ ED R H  +V L GD+
Sbjct: 874 SSREGLGFRELIPEDIRAHFEDVGLPGDI 902


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,811
Number of Sequences: 5004
Number of extensions: 28057
Number of successful extensions: 106
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)