Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0038
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.7  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              23   2.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   3.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.9  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   9.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.1  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 417 LVSIYLCLRIVVLSLSTLAPE 355
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 417 LVSIYLCLRIVVLSLSTLAPE 355
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 208 FRPDHLARSAPGRHEVDHDELVAC 137
           F+P  L   A G HE  ++ ++ C
Sbjct: 37  FQPSFLGMEACGIHETTYNSIMKC 60


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 292 LAGDVLALINVHLHND 245
           ++G V  LIN+HL +D
Sbjct: 169 ISGTVFDLINIHLFHD 184


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 11  TRVTACFLFAF*TVILFLVSIYLPKMSIHIKDSDDLKTRLAEAGDK 148
           T++T   +    +  + LV +Y PK+ I +   D    R    GDK
Sbjct: 735 TQITTLCVAISLSATVTLVCLYSPKIYIILFQPDKNIRRKVTMGDK 780


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 11  TRVTACFLFAF*TVILFLVSIYLPKMSIHIKDSDDLKTRLAEAGDK 148
           T++T   +    +  + LV +Y PK+ I +   D    R    GDK
Sbjct: 825 TQITTLCVAISLSATVTLVCLYSPKIYIILFQPDKNIRRKVTMGDK 870


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 307 RVNVVLAGDVLALINVHLHND 245
           ++ ++L   +LALINV   +D
Sbjct: 2   KIKILLFFTILALINVKAQDD 22


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 369 STNSKQLSLNTSK*RLKLYAAADGN*DGIKKKKH 470
           S++S     N+   R       DG+  G++KKKH
Sbjct: 107 SSSSDDERPNSIHQRASFSLNTDGDIAGLRKKKH 140


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 175 GRHEVDHDELV 143
           G H+VD DEL+
Sbjct: 122 GDHDVDKDELI 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,734
Number of Sequences: 438
Number of extensions: 1890
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)