Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0037
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.45 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.59 
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    28   1.4  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.4  
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    26   5.5  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   5.5  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    25   7.3  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   9.7  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.7  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = -2

Query: 399 TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEA 253
           TY+   I SS+ L+   S L++++S  +ASSS  PI   SSS VS   A
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSPIP-SSSSLVSTYSA 711


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = -2

Query: 465 TSELKTSLETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAF 286
           TS + TSL ++A               ++ SS+ +    S +L ++S    SSS      
Sbjct: 7   TSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66

Query: 285 KSSSWVSPSEA 253
            SSS+ SP+ +
Sbjct: 67  SSSSFTSPASS 77


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = +2

Query: 17  QEFGTRIRDTQATNMKTIICLFTIAIAAMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPG 196
           Q  G R+R+TQA N K++ CL  + I A+   +N S   +  +  +     T ++K + G
Sbjct: 732 QAVGDRLRETQAIN-KSLSCLGDV-IHALGNASN-STTKEKSHIPYRNSKLTYLLKYSLG 788

Query: 197 KSVVLSAFSVLPPL 238
           K      F  + PL
Sbjct: 789 KGAKTLMFVNVSPL 802


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 329 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 424
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/54 (20%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 16  AGIRHEDS-RYAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKWKR*LHSQNVYR 174
           + +RH++  R  GH H++  +++     G G  ++ L  A+++   + S+ +++
Sbjct: 142 SNLRHKNILRLYGHFHDEKRIYLILEFAGRGELYQHLRRAKRFSEEVASKYIFQ 195


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 488 NTVAAKSINDWVEENTNNRIKDLVNPDSLS 577
           +T +A SIN W+ +NT   I+ + N  SLS
Sbjct: 9   STSSASSIN-WIPKNTKTSIESVSNTISLS 37


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 525 KKIPITALRI*LIRTRSAQPQRLFSSTPSISREHGVLNLTSD 650
           +KI +TAL   +I TRS   +RLFS           L +TSD
Sbjct: 31  EKILVTALTDRIIGTRSETGERLFSIKKDEDDYVTALAITSD 72


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -3

Query: 434 LQNSRLVFHHHERILYSPF*AQRL*LI 354
           L+    +++ H ++++SPF +QR+ L+
Sbjct: 901 LEKQWTLYYSHSKLMFSPFSSQRIILL 927


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 116 NLSNVLKNGNDNFTARMFTEVV 181
           N  N+LK  ND   AR +TE V
Sbjct: 56  NSQNLLKQLNDEMKARKYTETV 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,219
Number of Sequences: 5004
Number of extensions: 53849
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)