Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0036
         (443 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK131302-1|BAD18470.1|  626|Homo sapiens protein ( Homo sapiens ...    57   2e-08
BC000595-1|AAH00595.2|  729|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ...    34   0.25 
AB209595-1|BAD92832.1|  737|Homo sapiens DEAD box polypeptide 17...    34   0.25 
AF451977-1|AAL49758.1| 1431|Homo sapiens cask-interacting protei...    30   4.1  
AB037727-1|BAA92544.1| 1154|Homo sapiens KIAA1306 protein protein.     30   4.1  
X96783-1|CAA65579.1|  386|Homo sapiens synaptotagmin V protein.        29   5.5  
DQ090951-1|AAY99640.1|  385|Homo sapiens synaptotagmin V protein.      29   5.5  
BC046157-1|AAH46157.1|  386|Homo sapiens synaptotagmin V protein.      29   5.5  
U07802-1|AAA91778.1|  482|Homo sapiens Tis11d protein.                 29   7.2  
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ...    29   7.2  

>AK131302-1|BAD18470.1|  626|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16275 fis, clone NT2RI2027157, moderately
           similar to Mouse SDR2 mRNA. ).
          Length = 626

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
 Frame = +3

Query: 75  MKVYACLCAAVVMLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPPYTITTDAQSV 254
           M V        ++L+  S V+   + G    +C  M+P+H  + Q S P + I     + 
Sbjct: 1   MAVSGFTLGTCILLLHISYVANYPN-GKVTQSCHGMIPEHGHSPQ-SVPVHDIYVSQMTF 58

Query: 255 APGDSVEVVIAGKLPEDTLRGYLLQARQGDDI----LGTFSLEDGDVFSQLINCGK-PGN 419
            PGD +EV ++G       +G+LL+AR  +D+    +G+F+L D +V SQL+ C    G+
Sbjct: 59  RPGDQIEVTLSG----HPFKGFLLEARNAEDLNGPPIGSFTLIDSEV-SQLLTCEDIQGS 113

Query: 420 AVTHK 434
           AV+H+
Sbjct: 114 AVSHR 118


>BC000595-1|AAH00595.2|  729|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 17 protein.
          Length = 729

 Score = 33.9 bits (74), Expect = 0.25
 Identities = 27/101 (26%), Positives = 36/101 (35%)
 Frame = +3

Query: 141 ARSTGAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRGY 320
           A +TG   S      P    TA+ +PPP  +T       P  ++   +    P  T+RG 
Sbjct: 25  ASATGDSASERESAAPAAAPTAE-APPPSVVTRPEPQALPSPAIRAPLPDLYPFGTMRGG 83

Query: 321 LLQARQGDDILGTFSLEDGDVFSQLINCGKPGNAVTHKKHD 443
               R  D   G F    G         G PG  +  KK D
Sbjct: 84  GFGDRDRDRDRGGFGARGGGGLPPK-KFGNPGERLRKKKWD 123


>AB209595-1|BAD92832.1|  737|Homo sapiens DEAD box polypeptide 17
           isoform p82 variant protein.
          Length = 737

 Score = 33.9 bits (74), Expect = 0.25
 Identities = 27/101 (26%), Positives = 36/101 (35%)
 Frame = +3

Query: 141 ARSTGAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRGY 320
           A +TG   S      P    TA+ +PPP  +T       P  ++   +    P  T+RG 
Sbjct: 27  ASATGDSASERESAAPAAAPTAE-APPPSVVTRPEPQALPSPAIRAPLPDLYPFGTMRGG 85

Query: 321 LLQARQGDDILGTFSLEDGDVFSQLINCGKPGNAVTHKKHD 443
               R  D   G F    G         G PG  +  KK D
Sbjct: 86  GFGDRDRDRDRGGFGARGGGGLPPK-KFGNPGERLRKKKWD 125


>AF451977-1|AAL49758.1| 1431|Homo sapiens cask-interacting protein 1
            protein.
          Length = 1431

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
 Frame = +3

Query: 129  RVSEARSTGAPLSACRDMMPQHNATAQT---SPPPYTITTDAQSVAPGDSVEVVIAGKLP 299
            RV  + S  AP  A +++    +   +     PPP      + ++A  +  +  +    P
Sbjct: 913  RVGRSHSVRAPAGADKNVNRSQSFAVRPRKKGPPPPPPKRSSSALASANLADEPVPDAEP 972

Query: 300  EDTLRGYLLQARQGDDILGT 359
            ED L G   Q R+  D+ G+
Sbjct: 973  EDGLLGVRAQCRRASDLAGS 992


>AB037727-1|BAA92544.1| 1154|Homo sapiens KIAA1306 protein protein.
          Length = 1154

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
 Frame = +3

Query: 129 RVSEARSTGAPLSACRDMMPQHNATAQT---SPPPYTITTDAQSVAPGDSVEVVIAGKLP 299
           RV  + S  AP  A +++    +   +     PPP      + ++A  +  +  +    P
Sbjct: 636 RVGRSHSVRAPAGADKNVNRSQSFAVRPRKKGPPPPPPKRSSSALASANLADEPVPDAEP 695

Query: 300 EDTLRGYLLQARQGDDILGT 359
           ED L G   Q R+  D+ G+
Sbjct: 696 EDGLLGVRAQCRRASDLAGS 715


>X96783-1|CAA65579.1|  386|Homo sapiens synaptotagmin V protein.
          Length = 386

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +2

Query: 323 AAGPAGRRHPRDFLARGRRRLLSAHQLR 406
           AAG AG RH  D LA  RR +   H LR
Sbjct: 348 AAGGAGLRHWADMLANPRRPIAQWHSLR 375


>DQ090951-1|AAY99640.1|  385|Homo sapiens synaptotagmin V protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +2

Query: 323 AAGPAGRRHPRDFLARGRRRLLSAHQLR 406
           AAG AG RH  D LA  RR +   H LR
Sbjct: 347 AAGGAGLRHWADMLANPRRPIAQWHSLR 374


>BC046157-1|AAH46157.1|  386|Homo sapiens synaptotagmin V protein.
          Length = 386

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +2

Query: 323 AAGPAGRRHPRDFLARGRRRLLSAHQLR 406
           AAG AG RH  D LA  RR +   H LR
Sbjct: 348 AAGGAGLRHWADMLANPRRPIAQWHSLR 375


>U07802-1|AAA91778.1|  482|Homo sapiens Tis11d protein.
          Length = 482

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = +3

Query: 6   AAGCRTTRSSLRAVLQISEEGSIMKVYACLCAAVVMLVMTSRVSEARSTGAPLSACRDMM 185
           A+ C ++ SS  +    S         A   AA  +L  T    +  + GAP +AC    
Sbjct: 296 ASSCSSSASSCSSASAASTPSGAPTCCASAAAAAALLYGTGGAEDLLAPGAPCAACSSAS 355

Query: 186 PQHNATA 206
             +NA A
Sbjct: 356 CANNAFA 362


>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related
           tumor marker CA125 protein.
          Length = 22152

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
 Frame = +3

Query: 108 VMLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPPYTITTDAQS--VAP-GDSVEV 278
           ++   TS  S+A S  +  +A +   PQH    +TSP   T    A +   AP   SV  
Sbjct: 505 ILRATTSSTSKASSWTSESTAQQFSEPQHTQWVETSPSMKTERPPASTSVAAPITTSVPS 564

Query: 279 VIAG--KLPEDTLRGYLLQARQGDDILG 356
           V++G   L   + +G  L+    D ++G
Sbjct: 565 VVSGFTTLKTSSTKGIWLEETSADTLIG 592


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,963,313
Number of Sequences: 237096
Number of extensions: 1018783
Number of successful extensions: 4272
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4271
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3659526016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)